KEGG   Pseudodesulfovibrio nedwellii: SYK_22160
Entry
SYK_22160         CDS       T09024                                 
Name
(GenBank) hypothetical protein
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pnw  Pseudodesulfovibrio nedwellii
Pathway
pnw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:pnw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SYK_22160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pnw03400]
    SYK_22160
Enzymes [BR:pnw01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     SYK_22160
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SYK_22160
DNA repair and recombination proteins [BR:pnw03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SYK_22160
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS NFACT_N Zn_ribbon_6
Other DBs
NCBI-ProteinID: BDQ37856
UniProt: A0ABM8B224
LinkDB
Position
complement(2401482..2402300)
AA seq 272 aa
MPELPEVEVIARGLNDTLTGRTIVSVEIPGLTRLSDAAEIIVPGVLGQGVRRAYRRAKVL
LVELANDTTLVFHLKMTGRVVHGDHRDIHKHDRIVFILDDGSWLIFSDMRKFGYVKLFTA
QQLENWEFLRKVGPEPLEVAPAELAERIAERKIAIKGLLLNQSVVAGVGNIYADESLFRA
GIHPETKGHQVSHVKALKLFSELQAVLKLAIRENGSSISDYVNAHGDAGAFQNSFNVYGK
KGQKCARCDTLLQAVKVAGRTSTFCPHCQPKR
NT seq 819 nt   +upstreamnt  +downstreamnt
atgcctgaactgcctgaagttgaagtcatcgcccgtgggttgaatgacaccctgacgggg
cgcactattgtatccgtggaaattccgggtctcacccgtttgagtgatgctgcggaaatc
attgtgcccggtgttctgggacagggtgttcgtcgggcatatcgtcgagccaaggtttta
ctcgttgaactggcgaatgacaccacgcttgtatttcatctcaaaatgacgggtcgggtg
gtccatggtgatcatcgtgatattcataagcatgaccggattgtttttatccttgatgac
gggtcatggttgattttttctgacatgcgcaagttcggttacgttaagttattcacagcc
caacagcttgaaaattgggagtttttacgaaaagtcggacctgagccacttgaggttgct
cccgctgaattggctgaacgaatcgctgaaaggaagatcgcgataaaagggctgctgctt
aatcaatcggtggtagccggggtggggaacatctatgcagatgagtccctgtttcgagcg
ggaattcatcctgaaacaaaaggccatcaagtcagtcatgtcaaggcgttgaagttgttt
tcagaattgcaggcggttctcaaactggcgattcgcgaaaacggcagctccatttcggat
tatgtcaatgcccacggtgatgccggggcttttcaaaacagctttaatgtgtacggcaag
aaagggcagaaatgtgctcgatgtgacacccttttgcaagccgtgaaggtcgcggggcgg
acgtctactttttgtccgcattgtcagccaaagcgataa

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