Pseudodesulfovibrio nedwellii: SYK_23400
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Entry
SYK_23400 CDS
T09024
Symbol
gyrA
Name
(GenBank) DNA gyrase subunit A
KO
K02469
DNA gyrase subunit A [EC:
5.6.2.2
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnw03032
]
SYK_23400 (gyrA)
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_23400 (gyrA)
Enzymes [BR:
pnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SYK_23400 (gyrA)
DNA replication proteins [BR:
pnw03032
]
Prokaryotic type
DNA Topoisomerases
SYK_23400 (gyrA)
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SYK_23400 (gyrA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_topoisoIV
DNA_gyraseA_C
Motif
Other DBs
NCBI-ProteinID:
BDQ37980
LinkDB
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Position
complement(2531216..2533663)
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AA seq
815 aa
AA seq
DB search
MSDTITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRAYKKS
ARVVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDMLVDGQGNFGSIDGDSAAAMRYTEVR
MAKLCGEFLGDIEKQTVDFNPNYDNTMQEPSVLPTKVPNLLLNGTTGIAVGMATNIPPHN
LSELIDGCVHILDNPDCSVESMMEFVKGPDFPTGGTVFGGQGLIDAYTTGRGSIKIRGIV
EKEEANKGKKERIVIKEIPFALNKSTLVEKIAQLVHDKKVDGVSDLRDESDRTGIRIVLD
LKRGAIADIIINSLYKFTPLETSFGINMMAVVGKRPMLLNLKEVLKYFLDHRREVIIRRT
KFDLDKCEKRVHILEGLHIALDNIDEVVKLIRASQSPEEARNSLMDRFELSEIQAKAILD
MRLQKLTGLEQDKLLEELAELMKRIEYFRSILDNEEVLKGVIRDELTEIKENYATPRKSE
LLLADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNYTAQRRGGKGIAGVQTGDGDFIH
TFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGGHVNNLLPLEKDEHIATCLSLRE
FDDDRFFLFVTKKGMIKRSSIGLYANCRTTGIRAVNLRDNDELMTVRELDRDVDCILASR
EGSAIRFNINDARPMGRATAGVKGMALRPNDEVVACVVTGDVDRDQLLTVSEGGFGKRTS
IDQYRSQTRGGKGILNMRLTNKTGKVISARMVNESDDVILLTTQNKVIRMSVSEVSQTRG
RATQGVRLVRMDADNKVAGFDLVMDDDEELTEKQS
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatacgattaccatcgaaagtgaactcaagaaaagttatcttgagtattccctc
tctgtcatcataggacgcgccatcccggatgtgcgtgacgggttaaaacccgtgcatagg
cgtattttattcgccatgcacgacctcggcaactaccacaatcgcgcttacaagaaatct
gctcgtgtggtcggtgacgtcatcggtaaataccatccgcatggtgactccgcagtatat
gatgccttggtccgtatggcccaggatttctctatgcgcgacatgctggtggatggtcag
ggtaacttcggttccattgacggcgattctgcggctgcaatgcgttatactgaagttcgc
atggccaagttgtgcggcgagtttctcggcgacatcgaaaagcagactgttgatttcaat
cccaactacgacaacacaatgcaggagccgtctgtcctgcccaccaaggtgccgaacctc
ttattgaacggtaccactggtattgctgtcggtatggcaaccaacattccacctcacaat
ttgagcgagcttatcgacggttgtgtacatatcttggacaatccggattgttctgttgaa
tccatgatggaatttgtgaaaggtccagatttcccgactggcggtaccgtattcggtggc
cagggattgattgatgcctacaccactggtcgtggttctatcaaaatccgtggtattgtg
gaaaaggaagaagccaataaggggaagaaagagcggatcgtgatcaaggagatccctttt
gctctcaacaaatccacgctggtcgagaagattgcccagctggtgcatgataaaaaggtc
gatggtgtttccgacctgcgtgatgaatcagatcgtaccggtattcgtatcgtccttgat
ctgaaacgcggtgccatcgccgacatcattattaattctctctacaaattcaccccgttg
gaaaccagtttcggcatcaatatgatggctgttgttggtaaacgtcccatgctgttgaat
ttgaaagaagtactcaaatactttttggatcatcgccgtgaggtgattatccgtcggacc
aagtttgatctcgataagtgtgaaaagcgcgtccacattctggaaggtttacacatcgct
cttgataacatcgacgaagttgtcaaactcattcgcgcatcccaatcgcctgaagaagcc
cgtaattctcttatggaccgcttcgagttgtctgagattcaggctaaggccattttggat
atgcgtctccagaagcttactggtttggagcaggacaaactgcttgaagaactggccgag
ctgatgaagagaattgaatacttcaggtctattcttgataacgaagaagttttgaaaggt
gtcattcgtgacgaattgaccgagattaaggaaaattacgccacaccgcgtaagtccgaa
ttgctcctggcagacctcgattctattgatatcgaagatctcattcctgatgaagaaact
gttatcaccctgtccagacgcggttatatcaagcgtactccgctgtccaactacacggca
cagcgacgtggcggtaagggaattgctggtgttcagaccggtgacggcgattttatccac
accttcatgttgactaccaatcatcagcatctggtcctgttcacgaacttcggtaagatg
ttcaagatcaaggtccatcaggtgcctgaaggcagccgttacgccaagggtgggcatgtg
aacaacttgctgccactggaaaaggatgagcatatcgcaacgtgcttgtcgctgcgtgaa
ttcgatgatgacaggttcttcctgttcgtgaccaagaagggcatgatcaagcgttcctcc
atcgggttgtatgccaattgccgcacgaccggcatcagggctgtgaatttgcgtgataat
gacgaactcatgaccgttcgtgaattggatcgggatgtggattgtatcctcgcgagccgt
gagggttccgctatccggttcaatatcaacgacgctcggcctatgggtcgcgccaccgca
ggcgtcaaaggtatggcacttaggcccaacgatgaagttgtggcgtgtgttgttactggt
gatgttgaccgcgatcaactgctgacggtatccgaaggcggatttggtaagcggacatca
atcgatcagtatcgtagccagactcgtggtggtaagggaatcttgaacatgcgtcttacc
aacaagaccggaaaggtcatcagtgcacgcatggttaacgaatccgatgacgtgattctg
ctcaccacgcagaacaaggttatccgaatgtccgtgtcggaagtcagccagacacgaggc
cgcgccacacagggtgtgcgcctggtgcgtatggatgccgacaataaggtggccggtttc
gacctggtcatggatgacgacgaagaactcactgaaaaacaatcataa
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