Pseudodesulfovibrio nedwellii: SYK_24610
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Entry
SYK_24610 CDS
T09024
Name
(GenBank) HD family phosphohydrolase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_24610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_24610
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
SYK_24610
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SYK_24610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_NucTran2_2
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
BDQ38101
LinkDB
All DBs
Position
2672854..2674200
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AA seq
448 aa
AA seq
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MSQPFKDAVGFCKTIMRNGYDAYVINVRLQALTLDETGDEKELDICTEAGLSELQKYFPN
LEESQDKGILGYLIEGGVKYYFYPADVTEASYTDEAVSVMTPRLLKRLEQRGDIPLSAVC
PFIPKAKDMYADFADFSEGKIRFKGVPDQALKKDYSLAYRALRFAANFDKEIEANSWIAI
VRNARRVLDYVPMSDFLDEWRKVEAEAMYKFFRLLFDSMLLHGLIPEVAALSRVHQIKNP
EEGSEETVLEHTFDVMKAYPEELPYDWYGTVACLFHDVGKLYTAEFYEEKWNFLQHHRVG
AKVSRKVLKRLRFEEQDIDLVCDLVQNHMRPHFMLTDKGIRRLRSLDEYPRIMEMVKADI
KARGASWREFNHNLKMAERADIPEDEIEPFMDGNRIMTLTGLKPGPIVGQIRDELLKAQI
ADDVVTDEDAEKFVIDYVKKNQCKGTTC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctttcaaagatgctgtcggcttttgtaaaaccatcatgcgcaacggttac
gatgcgtatgttatcaatgttcgcctccaggccctgaccctggatgagacgggcgacgaa
aaagaactcgacatctgcactgaggccggtctttccgagcttcaaaaatatttccccaat
ctcgaagaatctcaggataagggcattcttggttatttgattgaaggcggcgtgaagtat
tacttctatcccgctgatgtcaccgaggcttcctacacggatgaggcagtgtctgttatg
acacctcgcctgttgaagcggttggaacagcgcggggatattcccttgtccgctgtctgt
ccgtttatccccaaggccaaggatatgtacgccgattttgcggacttttccgaaggtaaa
atccgtttcaagggtgtcccggatcaggccctcaaaaaggattactccttggcatatcgt
gctctgcgatttgcggccaattttgacaaggaaatcgaggccaactcctggattgccatt
gtacgtaatgctcggcgagtgcttgactatgtccccatgtccgactttttggatgaatgg
cgcaaggtcgaggccgaagcaatgtacaagttctttcgcctgctctttgattccatgctc
ctgcatggcctgatcccggaagttgcggctttgtcccgcgtccatcagatcaagaatcca
gaagagggttccgaagagactgtgcttgagcacacctttgacgtgatgaaggcgtatccc
gaagaattgccttatgattggtacggcaccgttgcgtgtctgttccatgatgtgggcaag
ctttacacggctgagttctacgaggaaaagtggaatttcctccagcatcatcgtgtgggg
gccaaggtttcccgtaaggttctcaagcgtttgcgttttgaggaacaggatatcgacctt
gtgtgcgatttggtccagaatcacatgcggcctcatttcatgcttacagataagggcatc
cgtcgtctgcgttctttggatgaatacccacgcatcatggaaatggttaaagcggacatc
aaggcccgtggcgcttcttggcgtgaattcaatcacaacctcaagatggctgagcgcgcc
gatatcccggaagacgagatcgagccgtttatggacggtaatcggatcatgacgctcacc
ggtctcaaacccggtccaatcgtcggccagatccgtgacgaactgcttaaggcacagatt
gcagacgacgttgtcaccgacgaggacgccgaaaagtttgtcatcgattatgtcaaaaag
aatcaatgcaaaggcacgacctgctag
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