Pseudodesulfovibrio nedwellii: SYK_24820
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Entry
SYK_24820 CDS
T09024
Name
(GenBank) RNA polymerase sigma factor
KO
K03089
RNA polymerase sigma-32 factor
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnw03021
]
SYK_24820
Transcription machinery [BR:
pnw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYK_24820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r3
KORA
HTH_11
GntR
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BDQ38122
LinkDB
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Position
complement(2697076..2698107)
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AA seq
343 aa
AA seq
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MTSQETKTAVEPEIVDLEEKDLDTPKPNAVPINAPAKAAGLESKLPAFVPMPSSKEVRVR
DPLQLYLKEIARFPMLEPEEEYALAKRVQEENDQDAAFQLVSSHLRLVVKIAMDFQRRWM
QNGLDLIQEGNVGLLKAVTKFDPEKGIKFSYYAAFWVKAYILKYIMDNWRMVKIGTTQTQ
RKLFYNLNKERQRLQTMGFDPTTEVLSERLGVSEAEIVEMDQRLSKNDMSLNTPLGEDSD
ATKMDFLPSLGPGVEESIANNQIVDLLLDNLKEIRPTLNEKEATILDDRLLSEDPVTLRE
IGERFGVTRERVRQIEARLLAKIREHMTGRIKDFSKDWVVKQN
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgacatcacaagagacaaagaccgcagtcgagccggaaatcgtagaccttgaagaaaag
gacctcgatacaccaaagccgaatgctgtccccatcaatgccccggccaaagccgcaggg
ctggagtcgaagctccccgcatttgtcccgatgccctcttccaaggaggtcagggttcgg
gatcctttgcagctttatctcaaggaaatagcccgattccccatgttggaaccggaagaa
gaatatgcgctcgccaaacgcgtacaggaagaaaacgatcaggatgccgcattccagctc
gtctcttctcaccttcgactggtggtcaaaatcgccatggacttccagcgacgctggatg
cagaacgggctggatcttattcaggaaggcaatgtaggcctgctcaaagccgtaaccaaa
ttcgaccctgaaaaaggcatcaaattttcctattacgctgcattttgggtcaaagcctac
atcctgaaatatatcatggacaactggcggatggtcaaaatcgggaccacccagactcag
cgtaaactgttttacaatctgaacaaggaacggcaacgccttcagaccatgggattcgat
ccgacaaccgaagtcctgagtgaacgacttggcgtttccgaagccgagatcgtcgaaatg
gaccaacgtctgtccaagaatgacatgtcgttgaacacacctttgggtgaagactccgat
gccaccaagatggactttctgccatctttgggaccgggcgtcgaagaatctatcgccaac
aatcagattgtggacctcctgctggacaacctcaaggaaatccggcctaccctcaatgaa
aaagaagcaaccatccttgatgacaggctgctttccgaggaccccgtgactctgcgtgaa
atcggtgaacgattcggcgttacacgggaacgggtgcgacagattgaagccagattactg
gcaaaaatccgcgagcacatgaccggcagaattaaagacttttccaaggactgggtagtc
aagcagaattaa
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