Pseudodesulfovibrio nedwellii: SYK_25590
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Entry
SYK_25590 CDS
T09024
Name
(GenBank) lytic transglycosylase
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pnw01011
]
SYK_25590
Enzymes [BR:
pnw01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
SYK_25590
Peptidoglycan biosynthesis and degradation proteins [BR:
pnw01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
SYK_25590
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM1_NFP_LYK
LysM2_CERK1_LYK3_4_5
GldM_3rd
Motif
Other DBs
NCBI-ProteinID:
BDQ38199
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Position
2779112..2780734
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AA seq
540 aa
AA seq
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MEDNLKVFKYGYLLAMTVLVAGFAAGCTANKSPQATLPVEEVVSESQVPEDADALEPEII
ATPNEAEDHLSQTEQAVLNQRFGLLFDLEQHDSKDVELFFTFYTHKARKTMVRWLERSQP
YLPYVRRVFTQYGLPQDLVLLPFVESGYNVRAYSWAGAGGMWQFMRGTGRLYDLKADWWI
DERRDPYKATDAAARHLRDLYDRFGDWYLALAAYNAGEGKISRALKQAKCDTFFELTEKN
RKLSRRIRLKKETKQYVPKFIAISKVFQNLDTLGFEPVSWEMEVEVVPVKVPGGTDLLAL
AREGGMTWNEFHKYNPAFRRQVSPPHMQATAYLPVAKADKMMAYLSNPGSRPFAGYSRYR
IRSGDSWWRISRRFGVPINVLKSVNNTRSNTLRPGRYVMVPAHGSNKTVTASASSSSKTR
AIASKRGNYVVRSGDTLWSLSQSFGTTVNTLKRSNGLRSSRLKVGQKLYIPNSSNAATKQ
AVKEAGKVKTQMVNYKVRRGDNLTTISRKFGVKVTDLRRWNSLNSRGTIYAGQRLKVYVQ
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
ttggaggataatttgaaagttttcaaatatggatatttgcttgcgatgacggtgcttgtt
gcgggctttgcggctggctgtacagccaataaatctcctcaggccactttgcctgtggag
gaagtggtttctgaaagtcaggtcccggaagatgccgatgctcttgaaccggagattatc
gccacgcctaacgaggctgaagaccacctgagtcagaccgaacaggctgtgcttaatcaa
cgcttcgggttgttgtttgatcttgagcagcacgattccaaggatgtggagctgttcttt
acattctatacgcataaggcacgtaaaaccatggttcgttggctggaacgctctcagcca
tatctgccttacgtgcgtcgcgtctttacgcagtatggattgccgcaggatcttgtattg
cttccattcgtggagtccgggtacaatgttcgcgcttattcttgggccggtgccggtggc
atgtggcagtttatgcgcggaacaggtcgactctatgacctcaaggccgactggtggatt
gacgaacgtcgggatccctacaaggccactgatgcagccgcccgccatctgcgggatctc
tatgatcgatttggcgattggtatctcgcgttggcagcttataatgccggtgaaggcaaa
atttcacgcgctttaaaacaggcgaaatgtgatacctttttcgaactgacggaaaagaat
cgtaaattgtctcgccgaatccgtctgaaaaaagaaaccaaacaatacgttccaaaattt
atcgctatttccaaagttttccagaacctcgacacattgggctttgagccagtgtcttgg
gaaatggaagtagaagtcgtgccggttaaagtgccgggtggtactgatttgcttgccctt
gctcgtgagggtggcatgacatggaatgaatttcataagtacaacccggcgtttcgtcgt
caggtcagcccgccgcacatgcaggctaccgcctatttgcctgtggccaaggccgacaag
atgatggcgtatttgtccaatcccggttctaggccatttgcgggctatagccgttatcgt
attcgttccggcgattcctggtggcgtatttccagaagatttggcgtccccattaatgta
ctgaaaagcgtcaataatacccgttctaatacattacgccccggtcggtacgttatggtt
ccggcgcacggttccaataagactgtgaccgcgtctgcgtcgtcttcttccaagaccagg
gcaatcgcatccaagcgtggcaattatgtcgtccgttctggtgatactctttggtccctt
tcacagtcgttcggtacgaccgtgaacacgctcaagcgttccaacggtttgcggtccagc
cgtctcaaggttggccagaagctttatatccccaacagttccaacgcagccaccaagcag
gccgtcaaggaagcgggcaaggttaagactcagatggtgaattataaggtgcgtcgtggt
gacaacctgaccaccatctcccgcaagtttggcgttaaagttacagatttgcgccgctgg
aattccctcaactcgcgcgggaccatctatgcgggccaacgcctcaaggtgtacgtccag
tag
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