Pseudodesulfovibrio nedwellii: SYK_27760
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Entry
SYK_27760 CDS
T09024
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03030
DNA replication
pnw03430
Mismatch repair
pnw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYK_27760 (dnaE)
03430 Mismatch repair
SYK_27760 (dnaE)
03440 Homologous recombination
SYK_27760 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pnw03032
]
SYK_27760 (dnaE)
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_27760 (dnaE)
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SYK_27760 (dnaE)
DNA replication proteins [BR:
pnw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SYK_27760 (dnaE)
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SYK_27760 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
PHP_C
Motif
Other DBs
NCBI-ProteinID:
BDQ38416
LinkDB
All DBs
Position
complement(3016979..3020521)
Genome browser
AA seq
1180 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLSRSKDLGMPAVAITDHGSMFGAATFYMAAMEMGI
KPIIGCEVYVAPGDIDDEDAHKRKEKGGGYHLVLLAKNRKGYQNLTKLVTTGYLEGFYYK
PRVSKNLLKKHSEGLIALSACLAGEIPRKLMNEGLEEGVEMAKTYESIFPGNFYLELQDN
GIGKQTRLNELLIKCAEKTGLPMVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFKM
DTQELYFKTPEEMEKAFAHVPEAILNTQRIAEQCNLEIELGNYYFPEYELSEGVSDMDEE
FDKLCREGLKRRLDTITYEVDEKRYWDRLDYELGVIVEMGFPAYFLIVQDFINWAKDNRI
PVGPGRGSAAGSIVAWSLKITNLDPLPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVK
YCAEKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPDDPALMAKLLGV
EKAKINVPNAVKAVLELDDMVATDPKIAKLIDISTRLEGLCRHASTHAAGVVISDKPMVE
YLPLYKGKKGEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKNAPDLDTL
HLDDPDTFAIFAKGDTDGIFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGSH
GVSMVDEFIMRKHGDIDVTYPHPSLEDTLKPTYGVMVYQEQVMATAMTVANYSLGEGDLL
RRAMGKKIAEEMAKQRSRFLEGSRENEIPDKIANEIFDTMEKFAAYGFNKSHSAAYALIS
YHTAYLKAHFPVEFMAALMSTEMNNTEKIIMYINACRDMEITVKQPNINAGHARFSVLEG
DILYAMAAIKNVGEEAINEIVVERNDGGPFKDIFDFCERVNLRRVTKRVLESLIKAGALD
CFDCSRAALLEDLEKAVAIGQKKAKEKDSGMLNMLDMLGGGGQDAPSHSPTCSDIEEFDD
KEKLTLEKEVLGFFLSGHPLLAYRQDLARLRTSTLEDCKNIPNGTEVRVAVIIPDYKQFI
TKRGDPMAFCVAEDLTTSGEVTMLPKVYADARELIDADRPLMIQGKIDIREEPGQEEAPK
SAKILADKVMFLADAVQGSDKPVPLWIGEKSAVDSHLNMLKTILQRYPGNTHVTLGIITK
ESVVTLKLGHGWKIFPSREFWKDVEKWQNGDALKHQAAMK
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgttcatcttcacgtccatacagagtacagcctcttggacggcgcaatc
cgcatcaaggatctgctttcgcgatccaaagacctcggcatgcctgccgtggctatcacc
gaccacggatccatgttcggagccgcgaccttttacatggcagccatggagatgggcatc
aagcccattatcggctgcgaagtctatgtggctcccggtgacatagacgatgaggacgca
cacaagcgtaaggaaaaaggaggcggctaccatttggtgctactcgctaagaaccgcaaa
gggtaccagaacctgaccaaattggtaacaactggctacctggaagggttctactacaaa
ccacgcgtctccaaaaatttgctcaaaaaacactccgaaggactcatcgccctgtccgct
tgtctggcaggtgaaataccgcgcaaactcatgaacgaaggtctggaagaaggcgtggag
atggcaaagacctatgagtccatcttccccggcaacttctatcttgaattgcaggacaac
ggtataggcaagcagacccgactcaatgaattgctcatcaaatgcgcggaaaagactggt
ctgcccatggtcgcgaccaacgactgccattacctgacagccgaggactacgaagcgcat
gacaccctgctctgcatccagacacagaccactgtggacgcagagaagcggttcaagatg
gacacgcaggaattgtatttcaaaacgcctgaagaaatggaaaaggcattcgcccatgta
cccgaggccatcctcaacacccagcgcattgccgagcagtgcaacctcgaaatcgagttg
ggtaactactatttccctgaatacgagctgtccgaaggtgtatcggacatggacgaagaa
ttcgacaagctctgccgcgaaggtctcaaacggcgattggataccattacctatgaagta
gacgaaaaacggtactgggatcggctggactacgagctcggcgttatcgttgaaatggga
ttcccggcctacttccttatcgtgcaggacttcatcaactgggccaaggacaatcgcatc
ccagtcggccccggtcgtggttctgcagccggttcaatcgtggcgtggtctctcaagata
accaacctcgaccccctcccgtatgatctgctgttcgagcgtttcctgaacgtcgaacgt
gtatccatgcctgatatcgacgttgacttctgcgaacgccgccgtctcgaagtcgtcaaa
tactgcgccgagaagtacggccatgatcgtgtggcgcagatcactaccttcggcaccatg
aaaaccaaggcggttattaaagacgttggtcgcgcactcggcatgaccttcggcgaaaca
gaccgtatcgccaaactcatcccggacgaccccgccctcatggccaaactgctcggcgtg
gaaaaagccaaaatcaacgtccccaatgcggtcaaggctgtgttggaattggacgacatg
gttgccactgacccaaaaatcgcaaaactcatagatatttccacccgtctcgaagggtta
tgtcgacacgcctccactcatgcagcgggcgtggttatctcggacaaacccatggtcgaa
taccttcctctctacaaagggaagaagggtgaaatcgtgacccagttcgacatgaaaaaa
gtcgaaaaagtcggcctgatcaagttcgactttctgggcctgcgcaccatgactgttatc
gaggattgtctggacatcatccgcgaacagggcaaaaacgcgcctgacctcgacaccctg
catttggacgaccccgacaccttcgccatttttgccaaaggtgacacggacggcatcttt
caggtcgaatcatcaggcatgcgtaaatatctcaggatgctacgccctgactgcttcgaa
gacatcgtcgccatgctcgcgctctatcgtcccggcccgctgggcatgatcggttcccac
ggcgtcagcatggttgatgaattcatcatgcgtaaacacggcgacattgatgtcacctac
ccgcacccttcgctggaggacacgctcaagcccacatacggcgttatggtatatcaggaa
caggttatggccaccgccatgactgttgccaactactcactcggtgaaggtgacctgctc
cgacgtgccatgggtaaaaagattgccgaggagatggccaaacagcgttcccgttttctt
gaagggtcacgggaaaatgaaattcccgacaagatcgccaacgaaattttcgacaccatg
gaaaaatttgcggcatacggtttcaacaaatcacactccgccgcctacgcactcatttcc
tatcacaccgcctatctcaaggcgcacttcccggttgaattcatggccgctctcatgtcc
acggaaatgaacaacaccgaaaaaatcatcatgtacatcaatgcatgtcgcgacatggag
atcacggtcaagcagcccaacatcaacgcggggcatgctcgattctcagtacttgaaggc
gacattctctatgccatggccgccatcaaaaacgttggcgaagaggccatcaacgaaatc
gtggttgaacgcaacgacggcggacctttcaaagatatcttcgacttctgcgagcgggtg
aatctacgccgcgtgaccaaacgagtcttggaatcgctcatcaaagccggcgcattggat
tgtttcgactgttcccgtgctgccctgcttgaagatcttgaaaaggccgttgccatcggt
caaaaaaaggccaaggaaaaagattccggcatgttgaacatgttggacatgctcggcggt
ggcgggcaagacgccccatctcattcgcccacctgttcggatatcgaagaattcgacgac
aaggaaaagctgaccctcgaaaaagaggtgctcggtttcttcctgtcaggccaccccctg
cttgcctatcgtcaggacttggctcgattgcgcacctccacccttgaagactgcaaaaat
attcccaacggaacagaagttcgcgtggccgtgattatcccggactacaagcagttcatt
actaagcgcggtgaccccatggcattctgcgtggccgaagatctgaccacatccggcgaa
gtcaccatgttgcccaaggtctatgcggacgcacgcgagcttatcgacgcggaccgcccg
ctcatgattcagggcaagatcgacattcgcgaagaacctggtcaggaagaggcgcccaag
tcagccaagattctagccgacaaggtcatgttcctggcggatgcggttcaaggttcagac
aaacccgtgccgctctggatcggtgaaaaaagcgccgtggattctcatctgaatatgctc
aaaaccattctacaacgctatcccggcaacacgcacgtcactctcgggatcatcacaaaa
gaaagtgtggttacgctcaaactcggccatggctggaagatcttcccaagtcgcgaattc
tggaaagatgtggaaaaatggcaaaacggcgatgccttgaagcatcaggctgccatgaag
taa
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