Pseudodesulfovibrio nedwellii: SYK_28430
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Entry
SYK_28430 CDS
T09024
Symbol
cobB-1
Name
(GenBank) cobyrinate a,c-diamide synthase
KO
K02224
cobyrinic acid a,c-diamide synthase [EC:
6.3.5.9
6.3.5.11
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw00860
Porphyrin metabolism
pnw01100
Metabolic pathways
pnw01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
SYK_28430 (cobB-1)
Enzymes [BR:
pnw01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
SYK_28430 (cobB-1)
6.3.5.11 cobyrinate a,c-diamide synthase
SYK_28430 (cobB-1)
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Motif
Pfam:
GATase_3
CbiA
AAA_26
AAA_30
CBP_BcsQ
HTH_11
AAA_31
MipZ
Motif
Other DBs
NCBI-ProteinID:
BDQ38483
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Position
3100346..3101740
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AA seq
464 aa
AA seq
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MAQSNISRIVLAGLSGGTGKTIVSLALARAFKRAGKRVAPFKKGPDYIDAQWLSLAAGRP
CSNLDPFFHSTEMIRSLFFHKSCGSEISLVEGNRGLFDGMDEHGSCSTAELARMLDAPVI
LAIDCTKMTRTVAAIVQGCTHFEPGLNLAGVILNRTAGERHRSVLRKSIETHTDIPVLGM
LPKISSNPIPERHMGLVSDQEYDVPAQEALDALADMAEDLLDIDTIVDIATNAPDFGSDP
GPIYQSESVKKKVRIGYVQDASLWFYYPENLEALEHAGAELVRLSILSDEPWPTIDGLYL
GGGFPEVFAERIADNTTILAHINNLSESGMPIYAECGGFMVLCDSLEVNGASHPMAGVFP
VGTSFCPRPQGLGYTEAEAVEDNPFFSTGTCVQGHEFHYSLCVSDGSSTLRPALKMLRGQ
GGGVGYDGFLHKKTLAGYNHIHALAVPDWAIRFVAAASEYRSKS
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaagtaacatttctcgtatagttctggccggtttatccggcggcacagggaag
actattgtctctctggctttggctcgtgcttttaaaagagccggaaaacgggtggctccc
tttaaaaaggggccggactacattgatgctcagtggcttagtctggccgcggggcgtcct
tgttcgaatcttgatcccttttttcattcaacagaaatgatccgttctttattctttcat
aaatcatgcggctctgaaattagtttagtggaagggaaccgcggactctttgatggtatg
gacgagcacggttcctgttcgactgcggaattggcacgcatgcttgatgcgcctgttatt
cttgcgattgattgtaccaaaatgacgcgtactgtggcggcgatagttcaaggctgcaca
cacttcgagccggggttgaaccttgctggcgtgattctcaaccgaactgccggagaacgt
catcgttcggtgttgcgaaaatccattgagactcatacagatattccagtcttggggatg
ttaccaaaaatttcttccaatcctattcctgagcggcacatgggactcgtttccgatcag
gaatatgacgtccctgcgcaggaggctcttgatgcgctggctgatatggccgaagatctg
ctcgatattgacaccatagttgatatcgctacaaacgcacctgatttcggctcggatcct
ggtcctatttatcaaagtgaatccgtgaagaaaaaggttcgcattggttacgtccaagat
gcttccctttggttttattacccggagaatctcgaagctttggaacatgcaggtgcagaa
ttggttcggttgagcatcctttccgacgaaccgtggcccactattgacggtttgtacctc
ggcggtggttttcctgaggtttttgccgaacgtatagcggataacaccactattcttgct
catataaacaacctgtctgaaagtggaatgcccatttatgccgaatgtggtggattcatg
gtgctgtgcgattcgctagaggttaatggtgcttcccatccgatggctggagtctttccc
gttggaacgtctttttgccccaggccgcaaggcttgggctacactgaagcagaagccgtt
gaagataatccctttttctcgaccggaacatgtgtccaaggtcatgaatttcactattcg
ttgtgtgtttcagacgggtcttcaactttgcgacctgctttgaaaatgttgcgggggcag
gggggaggcgttgggtatgacggttttctgcataaaaaaacccttgccgggtataatcat
atccatgcccttgcagtgcctgattgggccatccgatttgttgccgcagccagcgaatat
cgttccaagtcttaa
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