Pseudodesulfovibrio nedwellii: SYK_28610
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Entry
SYK_28610 CDS
T09024
Symbol
groL_1
Name
(GenBank) 60 kDa chaperonin
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_28610 (groL_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_28610 (groL_1)
03110 Chaperones and folding catalysts [BR:
pnw03110
]
SYK_28610 (groL_1)
03029 Mitochondrial biogenesis [BR:
pnw03029
]
SYK_28610 (groL_1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnw04147
]
SYK_28610 (groL_1)
Enzymes [BR:
pnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
SYK_28610 (groL_1)
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SYK_28610 (groL_1)
Chaperones and folding catalysts [BR:
pnw03110
]
Heat shock proteins
HSP60 / Chaperonin
SYK_28610 (groL_1)
Mitochondrial biogenesis [BR:
pnw03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
SYK_28610 (groL_1)
Exosome [BR:
pnw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SYK_28610 (groL_1)
Exosomal proteins of other body fluids (saliva and urine)
SYK_28610 (groL_1)
Exosomal proteins of breast cancer cells
SYK_28610 (groL_1)
Exosomal proteins of colorectal cancer cells
SYK_28610 (groL_1)
Exosomal proteins of bladder cancer cells
SYK_28610 (groL_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BDQ38501
LinkDB
All DBs
Position
complement(3118149..3119735)
Genome browser
AA seq
528 aa
AA seq
DB search
MAKAIDYKAVAREGMQNGVNILANAVKVTLGPKGRNVMLEKTWGAPQVTKDGVTVAEKID
LEDKLENMGAQMVKEVASKTNEIAGDGTTTATVLAQSIFNEGVKLLAAGRNPMCIKRGID
MAVDALAEELEAMAKPVKKSSEIAQIGSISANNDMTIGEILAEAVERVGDNGVITVEESQ
GLSTQLDVVEGMQWDQGYLSPYFINDGDKQAAVYEDPFILLSEGKISSIKPLVPILEAVA
KAGRPLLIVAETVENDALAGLTINAMRGSLKVCAVKAPGFGERRKDMIRDIAIMTGATPV
SEDTAVTLESIQPNDFGTAKKVVVDKNNTLVVDGAGDKEVVARRCEEIMNMVNNSSSDYD
REKLQERLAKMVGGVAVIKVGAPTEIEMKERKDRVEDALNATRAAVDEGIVAGGGTALVR
AGKALAKVKGANDTEQAGVDIVVRAIEEPLRQIANNCGLEGTVIVEKVKALKGNNGFNAA
TGEYTDLVKAGVIDPKKVTRIALQNAASVSSMLLTTECAISEAVIEED
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagcaattgattacaaagcggttgcccgtgagggcatgcaaaacggcgtcaac
atcctggccaacgccgtcaaagttactctcggtcccaagggccgcaacgtcatgttggaa
aaaacctggggtgctcctcaggtaaccaaagacggcgtgactgtagccgaaaagatcgac
ttggaagacaagctcgaaaacatgggcgcacagatggtcaaggaagtcgcttccaagacc
aatgaaatcgccggagacggaaccaccactgctacagtgttggcccagtccattttcaac
gaaggcgtcaagctgctggctgccggccgcaaccccatgtgcatcaaacgcggtatcgac
atggctgtcgacgctctggctgaagaactggaagcaatggccaaaccggtcaaaaagagc
tccgaaatcgcccaaattggttctatttccgccaacaacgacatgactatcggtgaaatc
ctcgccgaagccgtggaaagagtcggcgacaacggcgtcatcaccgttgaagaatcccag
ggcctgtccacccagttggacgtggtcgagggtatgcaatgggatcagggttacctctcc
ccttacttcatcaatgacggtgacaaacaggccgctgtttacgaagacccgttcatcctg
ctctccgagggcaaaatttccagcatcaaaccgctggttcccatcttggaagccgtggcc
aaagccggacgtcccctgctcatcgtcgccgagacggttgagaatgacgctcttgccggt
ctgaccattaacgccatgcgcggttccctgaaagtctgcgccgttaaggctcccggcttc
ggtgaacgccgcaaggacatgatccgcgacatcgccatcatgaccggcgcgactccggtt
tcagaagacaccgctgtcactctggaatccatccagccgaacgatttcggtaccgccaag
aaagtggttgttgacaaaaacaacaccttggtcgtggatggtgcaggcgacaaggaagtc
gtagcacgccgctgcgaagagatcatgaacatggtcaacaactcttccagtgactacgac
cgcgaaaagctgcaagaacgtctggccaaaatggtcggcggtgtagctgtcatcaaggtc
ggcgctcctacagaaatcgaaatgaaagaacgcaaggaccgcgttgaagacgccctgaac
gccacccgcgcagccgttgacgaaggtatcgtcgccggcggcggaaccgctctggttcgc
gctggtaaagccctggccaaggtcaagggtgccaacgacaccgagcaggccggtgtggac
atcgtcgttcgcgccatcgaagagcctctgcgccagatcgccaacaactgcggcctcgaa
ggcacagtcattgtcgaaaaggtcaaagccctcaagggcaacaacggcttcaacgccgcc
actggcgagtacaccgatctggttaaggccggtgtcatcgacccgaaaaaggtcactcgc
atcgccctgcagaacgccgcttccgtgtccagcatgttgctgaccaccgaatgcgccatc
tccgaggctgtgatcgaagaagactag
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