Pseudodesulfovibrio nedwellii: SYK_31220 Help Entry SYK_31220         CDS       T09024                                  Symbol hsdR Name (GenBank) DEAD/DEAH box helicase   KO K01153   type I restriction enzyme, R subunit [EC:3.1.21.3] Organism pnw  Pseudodesulfovibrio nedwellii Brite KEGG Orthology (KO) [BR:pnw00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    02048 Prokaryotic defense system [BR:pnw02048]     SYK_31220 (hsdR) Enzymes [BR:pnw01000]  3. Hydrolases   3.1  Acting on ester bonds    3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters     3.1.21.3  type I site-specific deoxyribonuclease      SYK_31220 (hsdR) Prokaryotic defense system [BR:pnw02048]  Restriction and modification system (R-M system)   Type I R-M system    SYK_31220 (hsdR) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  ResIII EcoEI_R_C SWI2_SNF2 DEAD HSDR_N Helicase_C HSDR_N_2 AAA_11 DUF2726 SNF2-rel_dom Helicase_C_2 AAA_34 HHH_6 AAA_22 Motif Other DBs NCBI-ProteinID:  BDQ38762 LinkDB All DBs Position 3409212..3411572 Genome browser AA seq 786 aa AA seqDB search MNKKKLSERDICTKFITPALEKAGWDITTQIREEFPLTAGRIIVRGKLHTRAKNRRADYV LFHKPNIPVAIIEAKDNKHSIGDGMQQGLGYAEMLQVPFVFSSNGDGFLFHNKIATDGVI ERELSLDEFPSPEVLWQQWAVHQGLDEQQTDLVAQDYHSDGSGKTPRYYQLLAVNKTIEA IAKGQNRILLVMATGTGKTFTAFQIIWRLWRSKTKKRILFLADRNILVDQTMTNDFKPFG SAMTKIQKRQANKSYEIYLSLYQAVTGTEEEQNIYKQFSPEFFDLIIIDECHRGSAAADS AWRNILEYFSAATQIGLTATPKETKDVSNIDYFGDPIYTYSLRQGINDGFLAPYKVVRID LDKDLTGWRPDKGMTDKNGNVIEDRIYNQKDFDKTLVLPTRTQLVAKKISDFLRQTNRFD KTIVFCENIDHAERMRQALVNENGDLATESSKYVMRITGDNEEGKAELDNFIFPESKYPV IATTSKLMTTGVDAQTCKLIVLDQNIKSMTEFKQIIGRGTRINEDYGKFYFTIIDFKKAT ELFADPDFDGDPVQIYEPGPDDPTVPPEDEEPIIIDEGEDGEEVIIDFDPEGEGEDEGEG TRRYVVEGVKVKVASERVQYFDAEGNLITESLKDYTRKTLTKEFTSLDDFLRRWSSAEKK QAIIEELAEQGVFFEALAEEIGRDYGPFDLVCHVAWGAPPLTRRERADQVKKRDYFTKYG EQAQRVLEALVDKYADEGVTQIEETQILTISPFTELGTPIEIIKDFGGLDQYHKAIQELE EALYSA NT seq 2361 nt NT seq  +upstreamnt  +downstreamnt gtgaataagaaaaagctctccgaacgtgatatttgtacgaagtttattactcccgcgctt gagaaagcgggctgggatataacaacgcagattcgcgaggaatttcctcttacggctggg cggataattgttcgaggaaagctccatacacgtgccaagaatcgccgagctgattatgtc ttgtttcacaaaccgaatatcccggtcgccataattgaggccaaggataataagcattct attggcgatggcatgcagcagggtttgggctatgctgagatgctccaggttccattcgtc tttagctccaatggtgatggttttctcttccataataaaattgccacagatggtgttatt gagcgagaactcagtcttgacgaattcccttcacctgaagtcctctggcaacagtgggca gtgcatcagggattggatgaacaacagaccgatcttgttgctcaggattaccatagtgac gggagtggaaaaactccgcgctactatcagcttctcgcggtgaataaaactatcgaggct attgccaaaggtcagaatcgcatcctgttggtgatggcaaccggcacaggtaaaaccttc accgcctttcagatcatctggcgtttgtggagatccaagacgaagaaacgtatccttttc cttgctgataggaatatcctggtcgatcaaacgatgacgaacgactttaagccatttgga tcggcaatgaccaagatccaaaagcggcaggcgaataagtcctatgaaatctacctctct ctttatcaggctgtgactggcactgaggaagagcagaatatctacaaacaattcagccct gagttctttgacctgataattattgatgagtgccatcgaggtagtgctgctgctgattca gcttggcgtaatattttggaatacttctctgccgctacgcagatcggattgactgcaact cccaaggagaccaaggacgtttcgaatatcgattacttcggcgatcctatttatacttat tctcttcgccaaggaattaacgatggcttcctcgctccatacaaagtcgtgcgtatcgat ctggacaaagacctgacaggctggcgtcccgataaagggatgacggataagaacgggaac gtcattgaggatcgaatctataaccagaaagacttcgacaaaactctggtcctccccaca agaactcagctcgttgcgaaaaagattagtgactttctccgccagaccaatcgttttgat aagaccatcgtattttgtgagaacatagatcacgctgaacgaatgcgtcaggctttggtg aatgaaaatggtgatcttgctacggagagttccaagtacgtcatgcggattacgggcgat aatgaggaaggcaaagcagagcttgataacttcattttccctgaatcgaaatatccggtc atagccactacctcaaagttgatgactactggcgttgatgctcagacttgcaagctcatt gtcttggatcagaatatcaagtccatgacagagttcaaacagatcattgggcgcggtact cgaattaatgaggactatggcaagttctacttcaccattattgatttcaagaaagcaaca gaactctttgctgatcctgactttgacggtgatcctgtccagatatacgaacctggccct gatgatccaacagtcccccccgaagatgaagaacctataatcattgatgagggagaagat ggcgaagaagtgatcatcgactttgatcctgagggagaaggtgaagacgagggagaaggt actcggcgttatgttgtcgaaggcgttaaggtcaaagttgcttccgagcgggttcaatac tttgatgccgaaggcaacctgattactgagtctttgaaagactacacccgtaaaactctg acaaaagagttcacttcgttggatgacttcctgcgccgctggtctagtgctgagaagaaa caagcgattattgaagagcttgctgaacaaggtgtgttcttcgaggctctggctgaagag atcggacgagattatggtcccttcgatttggtgtgccatgttgcatggggtgctcctccg ctgacacgcagagaacgtgcggatcaagtcaagaaacgcgattactttacgaagtatgga gaacaggcccaacgagtgctggaagcgttggtggataaatacgcagatgaaggtgtcact caaatcgaagagacacagattcttaccatatcgcctttcacggaactcgggacacctatt gagattattaaagactttggtggcctggatcagtaccacaaagcaatacaggaacttgaa gaagccctttattcggcatag

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