Pseudodesulfovibrio nedwellii: SYK_31580
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Entry
SYK_31580 CDS
T09024
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYK_31580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnw03019
]
SYK_31580
03009 Ribosome biogenesis [BR:
pnw03009
]
SYK_31580
Enzymes [BR:
pnw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYK_31580
Messenger RNA biogenesis [BR:
pnw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYK_31580
Ribosome biogenesis [BR:
pnw03009
]
Prokaryotic type
rRNA helicases
SYK_31580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
ERCC3_RAD25_C
SnoaL
AAA_22
NAT10_TcmA_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDQ38798
UniProt:
A0ABM8B4P9
LinkDB
All DBs
Position
complement(3455151..3456818)
Genome browser
AA seq
555 aa
AA seq
DB search
MSSFKELGLSAATLTALESKGFTNPTPIQALTIPMLLDGSVDIVGQAQTGTGKTAAFGLP
VIEAAQEKVRHVQSLILTPTRELAIQVAEEINSLKGQKRIRVLPVYGGQAIHMQLKALKQ
GVDVVVGTPGRIMDHLKRRTLHIDNLDFFILDEADEMCNMGFVEDVREILASANEDRRTL
LFSATMPREVMRIAKEFMGDFEVVSVKPEKSDIPLTRQIFHEMADSDRFEALCRVIDAQP
DFYGLVFTRTRADADRVAARLTQRGYPSEPIHGDLSQGQREKILASFRKKKATILVATDV
AARGIDVPDLTHVVNFALPQDPQTYVHRTGRTGRAGKQGVAITLIAPNEFRRLMFISKSS
GIEIKKEKLPRIEDVIYSKKSRVVSELNAIMEAEGHSNYLDMARELMAEKDAAEVVAALL
KNTFGDELIASSYREIDLAGPGSGSRGQSGRVDLVCALGRAHGMGPKEFVEFVAQSAHIK
PWSIQHVRVQGNKTTFTVPNHEADKVMNKVNSRDGKPLITQGEFKKKPSYRRDFHKKGGQ
RPGKRPYMTRGKKKD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtttcaaggaactggggctgtcggctgccacgctgaccgctctggaatctaaa
gggtttacgaaccccacccccattcaggccctgaccatccccatgctgctcgacggctct
gtggatatcgtgggccaggcccagaccggaaccggcaagaccgccgctttcggccttccc
gttattgaagccgcccaggaaaaggtacgccacgtccagtcgctcatcctgacccccacc
cgcgaactcgctattcaggtggctgaggaaatcaattcactcaaaggacaaaaacgcatc
cgggttctgcccgtttacggtggacaggctattcacatgcaactgaaagccttgaaacaa
ggcgttgacgttgttgttggcacacctggtcgcatcatggatcatcttaagcgccgcacc
ctgcatatcgacaatctcgatttcttcattcttgatgaagcggatgagatgtgcaacatg
ggcttcgtggaagatgtccgcgaaattctcgcttccgccaacgaagatcgtcggaccctg
ctcttttcggccaccatgcctcgagaggttatgcgcattgccaaggaattcatgggcgac
ttcgaagtcgtctccgtgaagcctgaaaaaagcgacattccgctcactcgacagattttc
catgagatggccgactcagaccgttttgaggctctttgcagagttatcgacgcccagccg
gacttctacggtctggtcttcacacgcacacgtgctgatgcagatcgggtagctgcccga
ctgacccagcgtgggtatccttccgaaccgatccatggtgatctttcgcagggccagcgt
gaaaaaattctggcgagtttccgtaagaaaaaggcaaccatccttgtggcaacagatgtt
gcagcacgtggtattgacgtgccggacctgacacacgtggtcaactttgccctgcctcag
gacccacagacatatgtacaccgcaccggacgtacaggccgagcagggaaacaaggcgtt
gccatcactctgatcgcgcctaatgaattccgtcgcctcatgttcatctccaaaagctcc
ggcattgagatcaaaaaagaaaaattgccgcgcatcgaagatgtaatatattccaagaag
agccgcgtggtttccgaactgaacgcaatcatggaagctgaaggccatagcaactacttg
gacatggcccgcgaactgatggctgaaaaagatgccgccgaagtcgtggccgccctgctc
aaaaacaccttcggagacgaactgatcgcctcaagctatcgcgaaatcgatcttgccggc
cctggttcaggttctcgtggtcagtccggacgagttgatctcgtctgcgcactaggtcgc
gctcacggcatgggtccaaaagaattcgttgaatttgttgcccagtccgctcatatcaaa
ccttggtccattcagcatgttcgcgtgcaaggcaacaaaaccacgttcactgtccccaat
catgaagccgacaaggtcatgaacaaggtcaacagcagagatggcaaaccgctcatcaca
caaggcgaattcaaaaagaaaccatcctaccgtcgtgacttccacaagaaaggtggacaa
cgtcccggtaaacgaccttacatgactcggggcaagaaaaaagattaa
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