Pseudodesulfovibrio nedwellii: SYK_33340
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Entry
SYK_33340 CDS
T09024
Symbol
clpB
Name
(GenBank) chaperone protein ClpB
KO
K03695
ATP-dependent Clp protease ATP-binding subunit ClpB
Organism
pnw
Pseudodesulfovibrio nedwellii
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03110 Chaperones and folding catalysts [BR:
pnw03110
]
SYK_33340 (clpB)
Chaperones and folding catalysts [BR:
pnw03110
]
Heat shock proteins
HSP100
SYK_33340 (clpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
ClpB_D2-small
Clp_N
AAA_5
AAA_22
AAA_16
Sigma54_activat
ATPase_2
NACHT
nSTAND3
AAA_14
IstB_IS21
TniB
AAA_7
AAA_24
AAA_18
RNA_helicase
Roc
Zeta_toxin
T2SSE
NBD_SMAX1
DNA_pol3_delta2
DUF447_C
Motif
Other DBs
NCBI-ProteinID:
BDQ38974
LinkDB
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Position
3638797..3641394
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AA seq
865 aa
AA seq
DB search
MDPNTFTKKTQDAVSEAQNLAIRSGHQQIDCEHLMHALVTQEQGLVPQILRKLGVAPDAY
LGAIDAEIAKMPRVTGSGARPDQIVVTPRMQKALVAADDMRKRMKDEFVSVEHVFVVLMD
ESTSSGVGRVNKQFGLDKNKVLGALEEVRGKQRVTSDNPEATYDSLKKYGRDLVEEARSG
KLDPVIGRDSEIRRVIRILSRRTKNNPVLIGEAGVGKTAIAEGLAQRIVKGDVPEGLKDK
TVFSLDMGSLIAGAKYRGEFEERLKAVLKEVQESAGQILMFIDELHTIVGAGKTDGAMDA
GNILKPMLARGELHCIGATTIDEYRKYIEKDPALERRFQTVLVEEPNVEDTISILRGLRE
RFEVHHGVRIADGAIVEAAVLSNRYIMDRQLPDKAIDLIDEAAALIRTEIDSQPYELDKA
NRQVMQLEIEREALKRESDKASRERLVELEKKLAEIKENQSVLLAQWENEKGSIERLRSL
KEDIEITRREVDEAKRVLDYNRAAELEYGRLATLEKDLNARNEALESGDTPRMVREEVGP
DDVAQVIARWTGIPVSRLMEGEREKLLKLGDMLHERVIGQDDAVQAVADAVLRARAGLKD
PSKPIGSFIFLGPTGVGKTELCKTLASALFDSEDNMVRIDMSEYMEKHTVARLIGAPPGY
IGYDEGGQLTEAVRRKPYSVILFDEIEKAHHDVFNVLLQILDDGRLTDSHGRTVDFKNTI
VIMTSNLGAEYMLDGIDQTGEFREGVEAQVMDVLRHHFRPEFLNRVDETVLFRPLTPIQL
AGIIDLLVAGLRSRLEDRKIELVLTEKAKAFIAESAYEPSFGARPLHRYLQAHLETPLAK
LLISGELADGASVTVDEKDGRLMFV
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaatacttttacgaaaaaaacacaggacgctgtttccgaggctcagaatctg
gccattcgaagcggacatcagcaaatcgattgcgagcatctcatgcacgctcttgttacg
caggagcaggggttggttccccaaatcctgcgtaaactcggagtggcccctgatgcctac
cttggcgccattgacgccgaaatagctaaaatgccccgtgtgaccggttccggcgcacgc
cccgaccagatcgttgtcaccccgcgtatgcagaaagcattggtggcggctgacgacatg
cgcaaacgtatgaaggacgagtttgtttccgtggaacacgtattcgttgttcttatggac
gaatcaacttcttctggcgtgggccgtgtgaataagcaattcggtttggacaagaataag
gtccttggtgcgcttgaggaagtgcgtggtaaacagcgcgttacgtccgacaatcccgaa
gccacatacgattcgctcaagaagtacggacgtgaccttgttgaagaggcccggtccggc
aaactcgatccggtcattggtcgggatagcgagattcgtcgagttatccgtatcctttcc
cgtcgcaccaagaataacccggtgctcatcggtgaggccggtgtcggaaagaccgccatt
gccgagggattggcccagcgtatcgtcaagggcgatgtgcccgaggggctcaaggacaag
accgtcttttcgctggacatggggtcgctcattgccggtgcaaagtatcgcggtgagttc
gaggaacggctcaaggccgtgcttaaggaagtgcaggaatccgctggacagatccttatg
ttcattgatgaattgcacaccattgtgggcgcgggcaagactgatggtgccatggacgcg
gggaatatcctgaagcccatgctggctcgtggagaactccattgtattggtgcgaccacc
attgacgagtatcgtaagtacattgagaaggacccggctcttgaacgccgtttccagact
gtgcttgtggaagagccgaacgtggaagacaccatctccatcctgcgcggactgcgcgag
cgatttgaagtgcaccatggtgtgcgcattgcagatggggcgatagtggaagctgccgtg
ttgtccaatcgttatataatggaccgtcaattgccggataaggctattgaccttattgat
gaggccgcagcgttgatccgtacagagattgactcccagccttatgagttggacaaggcc
aatcgtcaggtcatgcagctcgaaatcgagcgtgaagcattgaaacgggagtcggacaag
gcttctcgtgaacgattggtggaattggaaaagaagttggctgagatcaaagaaaatcaa
tcggttcttttggcccaatgggaaaatgagaaagggagcatcgaacgcctgcgttccttg
aaagaagatatagaaataacgcgtcgtgaagttgacgaagccaagcgtgtgcttgactac
aaccgtgccgctgaattggaatatggtcggctggcaacattggaaaaagatcttaacgcg
cgaaacgaggccttggaatccggggacacgccgcgcatggtcagggaagaagtcggcccg
gatgatgtggctcaagtcatagcccgatggaccggtattccggtgtcccgcctgatggaa
ggagaacgtgagaagctgctcaagctcggcgatatgctgcatgagcgggttattggtcag
gacgacgctgttcaagcagtggctgatgctgttctgcgtgctcgtgcaggtctcaaggac
ccgagtaaaccaatcggttcgtttattttcctcggtcccacgggtgttggtaagacagaa
ctgtgcaagacgcttgcgtccgccctgttcgattccgaggacaatatggttcgtatcgac
atgtccgaatatatggaaaagcacaccgtggcccgactcatcggtgcgcctccgggttat
atcgggtatgacgaaggtggtcagttgactgaggctgtcaggcgcaagccatactcggtc
attttgtttgacgaaatcgaaaaggcgcaccatgacgtgttcaatgtgctccttcagatt
ctcgatgacggacgactgactgattctcatggtcggaccgtggatttcaagaatactatc
gtcattatgacgagtaatcttggtgcagagtatatgctggatggcattgatcagaccggc
gagttccgggaaggcgtggaagcgcaggtcatggacgttctgcgtcatcatttccgacct
gagtttctcaatcgtgtggatgagaccgtgttgtttcgaccacttacgccgatccagctt
gcaggtattattgatctgctggtggcaggattgcgttcccggttagaagatcgaaagatc
gagttggtgcttacggaaaaggccaaggcgtttatcgctgaatctgcgtatgaaccgagc
tttggtgcgcgtccccttcatcgttacctgcaggcacatttggaaacaccacttgcaaag
ctgcttatcagcggagaattggcggatggcgcctctgtgactgtggacgaaaaagatggt
agactgatgttcgtataa
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