Pseudodesulfovibrio nedwellii: SYK_34250
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Entry
SYK_34250 CDS
T09024
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pnw
Pseudodesulfovibrio nedwellii
Pathway
pnw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pnw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYK_34250 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnw03021
]
SYK_34250 (rpoA)
03400 DNA repair and recombination proteins [BR:
pnw03400
]
SYK_34250 (rpoA)
Enzymes [BR:
pnw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYK_34250 (rpoA)
Transcription machinery [BR:
pnw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYK_34250 (rpoA)
DNA repair and recombination proteins [BR:
pnw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYK_34250 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RAD51D_N
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
BDQ39065
UniProt:
A0ABM8B5F2
LinkDB
All DBs
Position
3721874..3722914
Genome browser
AA seq
346 aa
AA seq
DB search
MLIENGDKLINTRNWSELVKPEKLVRDLKSSEMYGKFICEPLERGYATTIGNAMRRVLLS
SMQGCAIVSASIEGVQHEFTTVPGVLEDMTEVVLNMKLVRMAMTTDEPQRLTLEANKKGQ
VTAGMIQENQNVTVLNKDQLIATLTENRSFKMELEVRMGKGYVPADMHEGLTDEIGSMIL
DASYSPVKKVAYAVEQARVGQMTNYDKLILEVWTDGSVSPEDACAYSAKILKEQLSVFIN
FDELSSETQEEEDDAIDLNPNLFKSIDELELSVRATNCLKAANIQLVGELVQRTEQAMLK
TKNFGRKSLDEIRRVLDAMTLKFGMTVEDFDKKYQEWLKRKEKNEA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgagaacggcgacaaactcatcaacacccgcaattggagcgaactggtcaag
cccgagaaattggtgcgcgatctcaagtcctctgagatgtacggtaaattcatctgtgaa
cctttggagcgtggttatgctaccactattggtaacgccatgcgccgggttcttctttcc
tccatgcaggggtgtgccattgtgtccgcctccattgagggagtgcagcatgagttcacc
accgtacctggtgttcttgaggacatgaccgaggtcgtgctgaacatgaaacttgttcgt
atggcaatgaccacggacgagcctcagcgcttgacacttgaagctaacaagaagggccag
gttacggctggcatgattcaggaaaatcagaacgtcactgttttgaacaaggatcagctc
attgctaccctgaccgagaaccgtagcttcaagatggagttggaagtccgcatgggcaag
ggctatgtccctgctgatatgcacgaaggactgaccgacgaaatcggctccatgatcctc
gacgccagttactccccagtcaagaaggtcgcgtacgccgtcgaacaggcgcgtgtcggc
cagatgaccaactacgacaagctcattctcgaggtctggaccgatggttcggtttccccc
gaggatgcctgtgcatacagtgccaagatcctgaaagagcaattgtctgtcttcattaac
ttcgatgaactctcatcagagactcaggaagaagaagatgatgcaattgatctgaacccg
aacctcttcaagtccattgatgaactcgaactttcagttcgtgccaccaactgcttgaag
gccgctaacattcagttggttggtgaactggttcaacgtaccgaacaggccatgttgaag
accaagaactttggtcgtaaatccttggacgagatccgtcgcgttctggatgccatgact
ttgaagttcggtatgacggttgaggattttgacaagaaataccaggaatggttgaagagg
aaagagaaaaatgaggcatag
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