Populus nigra (Lombardy poplar): 133667835
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Entry
133667835 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133667835
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
133667835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133667835
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133667835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
133667835
NCBI-ProteinID:
XP_061943493
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All DBs
Position
11:519589..522892
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AA seq
592 aa
AA seq
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MTRKRKPQKNPPQEIVEEGEAAEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQ
HNGELRSGACRTKKRRPWEMVICVYGFPTNVAALQFEWAWQHPTESVAVRQAAAAFKSFS
GVANKIKLAYTMLNLPSWQSLNITVNYFSTKYKVHSAGCPSLPKNMKVQICPMNELPCYS
DFVDNLFEERDDEDAWDGEEEYERASDGSGMVDANLVELDDSSMDKVPCYNGREEIIFEG
EYGETEDREACNSSGPVNKTFNESGNTCGTVKETNADATDCAHSIEKTSDEQIKWFEEYE
QQDQREPSSPELGRAQPFHFMNSLARKAFSMNTLARKSTSIVTTFSISETEDKDVLTLID
ENVSELDLKRGKELVTDKDVEATYTSGAVETCVDAHTSADYPHSINKTSHEQFGWSEPYG
MQDQRDPPSPEPDQAQPFGFMNQPARQASSIVTDFSVRETRDRDVLTLIDEDAFELDWPR
WKKLSSKINTGKDEQLNRSSSSIVTDFSVRETRDRGVLTLIDEDATELDWPGWKKLSSKI
NTGKDKQLNRSSSISREIEIVDLSSPSLECRIRPDSKKRRVSPTYPVIIDLT
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaagagaaaaccccaaaaaaatcctcctcaagaaatagtagaagaaggagaa
gcagcagagaaggggaaaaatgggttcttcgcttgctatctcttgacttctctttgcccc
agattcaaaggccatacctatatcggatttacagtgaatccgcggcggagaattaggcaa
cataatggtgagcttagaagtggagcatgcaggactaagaaaagaaggccatgggaaatg
gttatctgcgtttatggtttcccaactaatgttgctgctttgcagtttgaatgggcatgg
cagcacccaacagagtcagtggctgtcaggcaggcagctgccgcatttaaatccttctcg
ggagttgccaacaagattaaacttgcttacacaatgcttaacctcccgtcttggcagagc
ttgaacatcacagtaaactatttctcaacgaaatacaaagtgcattctgctggttgtcca
agcttgccaaagaacatgaaggtccaaatttgccccatgaatgagcttccctgctattct
gattttgttgataatttgtttgaagagagagatgatgaagatgcctgggatggtgaagag
gaatatgagagagctagtgatggaagtggaatggttgatgcaaacttggtggagctggat
gattcctccatggataaggttccatgctataatggaagggaggagattatctttgaaggt
gaatatggtgaaacagaagatagggaagcttgtaacagcagtggacctgtaaacaaaaca
tttaacgaatctggtaacacatgtggaactgtaaaagaaacaaatgcagatgctacagat
tgtgcacatagcattgaaaagacttctgacgagcaaatcaaatggtttgaagaatatgaa
cagcaagaccaaagggagccatcctctccagagctaggtcgtgcacagccttttcatttc
atgaattcactagcgagaaaagcattttcgatgaacacactagcgagaaaatcaacttca
attgtcactactttttctattagcgagactgaagataaggatgtattgacattgattgat
gagaatgtttctgaattggatttgaagagggggaaggaattagttaccgacaaagatgtt
gaagctacttatacaagtggagctgtagaaacatgtgtggatgctcatacttctgcagat
tatccacatagcattaacaagacttctcacgaacaatttggatggtctgaaccatatggc
atgcaagaccaaagagatccaccctctccagaaccagatcaagcccaaccatttggtttc
atgaatcagccagcaaggcaagcatcttcaattgttacagacttttctgtgagagagact
agagatagggatgtattgacattgatcgatgaggatgcttttgaattggattggccaaga
tggaagaagctctctagcaaaataaacactggtaaagatgaacaactgaaccgaagttca
tcttcaattgttacagacttttctgtgagagagactagagataggggtgtattgacattg
attgacgaggatgctaccgaattggattggccaggatggaagaagctctctagcaaaata
aacactggtaaagataaacaactgaaccgaagttcatccatctctcgggaaattgagatt
gtagatttgtcgtctccatctctagaatgcagaattaggccagacagcaagaagaggaga
gtttctcctacgtatcctgtaattattgacttgacttag
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