Populus nigra (Lombardy poplar): 133668439
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Entry
133668439 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133668439 isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133668439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133668439
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133668439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
133668439
NCBI-ProteinID:
XP_061944276
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Position
1:complement(12808177..12815384)
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AA seq
323 aa
AA seq
DB search
MANLPQSLSMNAPFGVPSASNPASAAVAGAPANKDRKMASAEHLVLDLSSPDLRENALLE
LSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLSPAQSNRVCNALALLQCVA
SHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLST
EIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALA
EQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLH
NVGGNRVVPGLQAGGGFDHMLVN
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcttcctcaatctctatcgatgaacgcaccgttcggagtcccaagcgcgtct
aatccagcctccgccgcagtagccggagctccggctaacaaagaccggaagatggcatca
gcagagcacttggttcttgacctaagcagtcctgatcttcgtgaaaacgcccttcttgaa
ctctctaagaagagagaattatttcaagatttggctccattgttgtggaattcttttggt
actattgctgcactgttacaggagatcgtctcaatataccctgtcttgtcaccacctaac
ttaagtcctgcacaatcaaatcgagtttgtaatgctctagctcttcttcagtgtgtggct
tcacatccagacacaagaatgttgttcctcaatgctcatatacctttatatctgtaccct
ttcctgaatacaactagcaaatcaaggccttttgagtacctgaggctcactagtttaggt
gtcattggtgccctagtgaaggttgatgacacagaagttattagtttccttctttcaact
gagattattccactgtgtctgcgtactatggagatgggaagtgaattgtcaaaaacagtt
gccacatttatagttcaaaagattttattggatgatgtgggcctggattatatttgcact
acagcagaacggttttttgcagtgggccgagttttggggaacatggttgcagcacttgct
gaacaaccatcatcacggttattaaaacatattatccgatgttatcttcgactttcagat
aatccaagggcttgtgatgcattgcgaagttgcctgccagacatgctgagagatgccacc
ttcagtagctgcctacgtgaagatccaacaacaaggcgatggctgcaacagttgcttcac
aacgtgggagggaatcgggtggttccaggacttcaggctggtgggggatttgatcatatg
ctggtgaactaa
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