Populus nigra (Lombardy poplar): 133668456
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Entry
133668456 CDS
T10372
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133668456
03036 Chromosome and associated proteins [BR:
pnz03036
]
133668456
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
133668456
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133668456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
133668456
NCBI-ProteinID:
XP_061944302
LinkDB
All DBs
Position
11:12952433..12967853
Genome browser
AA seq
1485 aa
AA seq
DB search
MEEKNEEVEDIDSASSDSFIDDYENDEPSTSGQDDGTRIQVPLTDQEIEELVAEFLEVES
KAAEGQEALEKESLAKVESDVREELAQSLQGDDLEAAVEDEMATFREEWENVLDELETES
YHLLEQLDGSGIELPSLYKWIESQAPNGCCTEAWKRRAHWVGSQVTKETIDSVADAEKYL
QIHRPARRRHGKLLEEGASGFLQKKLSMDGSEAIVENGEVDWVSMKKLFSTSSGEDVASF
GSKHWASVYLANTPQEAALMGLKFPGVNEVEEIEDIDEDSIDPFVAEAVANEKELVLSEE
QRKSYRKVKEEDDAKIDQKLQLHLKQRRQRKRCKQGVSSVIQEMGRNMDESLPLDDDYNE
VTCQDLKKDKLSVDLVMEHSTGKSNSVFPESALPDATEPRRSKRPNESEDRSINDKKIRT
VIIDSDDEADILEDKSVHNIKVEDQSTLQENTGDPTTDCNPSQGSNEKFLCTACDKVAVE
AHSHPLLKVIVCKDCKFLMEEKMHAKDPDCSGCYCGWCGRNIELVSCKSCRTLFCTACIK
RNIGEEYLPKVPASGWQCCCCSPSLLQMLTLQLEKAVGSGDTMITSSDSDSESSDTDGGV
TIRSKRKKKKKIRRIIDDAELGEETKRKIAIEKERQERLKSLKVQFSDKSKMINPASCSG
NLTEGASVEVLGDATTGYIVNVVREKGEEAVRIPPSISSKLKAHQVAGIRFLWENIIQSI
GKARSGDKGLGCILAHMMGLGKTFQVIAFLYTAMRSVDLGLRTVLIVTPVNVLHNWRKEF
MKWTPSEVKPLRVFMLEDVSRERRAELLAKWRAKGGVFLIGYSAFRNLTLGKNVKEPKLA
REICNALQDGPDILVCDEAHIIKNTRADTTQALKLVKCQRRIALTGSPLQNNLMEYYCMV
DFVREGFLGSSHEFRNRFQNPIENGQHTNSMVDDVKIMNQRSHILYEQLKGFVQRMDMSV
VKKDLPPKTVFVVAVKLSPLQRKLYKRFLDVHGFTNGRVSNEKMRKSFFAGYQALAQIWN
HPGILQLRKGRDYIGREDNVENVLADDCSSDENVDYNTIVGEKSRNQNDFVQGKSDDGFF
QKDWWNDLLHENNYKVIDYSGKMVLLLDILVMSSNGGDKTLVFSQSIPTLDLIELYLSRL
TRHGKKEKFWRKGKDWYRLDGRTESSERQRLVERFNDPENKRVKCTLISTRAGSLGINLY
AANRVIIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTKEGLAA
RVVDRQQVYRTMSREEMLHLFEFGDDEKSDTLNDIGQEYRHADTRNVTCQTVNSLKENIP
CSHGSCSSDKLMESLLDKHRQRWIFDYHEHETLLQENEEEKLTKEEQDMAWEVYKRSLEW
EEVQRVSLDDSTFERKPQMSNGASSALDTSSIPLPSMAPPASEASKVAPSKSILRSRVVQ
RKCTNLSHLLTLRSQGTKAGCTTVCGECAQEISWEDLNREGKAAR
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaaaaaatgaggaagttgaggacattgacagtgcttcaagtgattcatttatt
gatgattatgagaatgatgagccttctacatctggacaagatgatgggacccgtattcag
gtgcctttgactgatcaagaaatagaggaattggttgccgagttcttggaagttgagagc
aaggctgcagagggtcaagaagcactggaaaaagagtctcttgcaaaagttgagagtgat
gtgagagaggagttggcacaaagtcttcagggtgatgatctggaggcggccgttgaagat
gagatggcaactttcagggaagagtgggaaaatgtgcttgatgagcttgagactgagagc
taccatttgttggaacaacttgatggatctggtattgagctaccaagcctttataagtgg
atcgaaagtcaggctcctaatggttgctgcactgaagcttggaaaaggagggcacactgg
gtgggatctcaggtgaccaaggaaactattgattcagttgctgatgctgagaaatatctt
caaatccataggcctgctagacgacgtcatggtaaattattggaggagggtgcaagtgga
tttctgcagaaaaaactttccatggatggaagtgaggctattgtagaaaatggagaagta
gattgggtctctatgaagaaactattctcaactagcagtggggaggatgttgcttcattt
ggtagtaagcattgggcttctgtttacctggccaatactccccaggaagctgcacttatg
ggacttaaatttcccggagtcaatgaggttgaggagattgaagatattgatgaggattcc
attgatccatttgttgcagaggccgtggcaaatgaaaaggaacttgttctttcagaggaa
cagagaaaaagttatagaaaggtcaaagaggaagatgatgcaaagattgatcagaaactt
caacttcatttgaaacagaggagacagcgtaagagatgtaaacagggtgttagctcagtc
atccaggaaatgggaaggaacatggatgagtcactgcctctggatgacgattacaatgaa
gtcacatgccaagatttgaagaaagacaagctttctgtagaccttgtaatggaacattct
acaggtaagagcaattcagttttcccagagtctgcgctgcctgatgccactgaacctaga
aggtcgaagcgtccaaatgagagtgaggatcgaagcatcaatgataagaagattcggact
gttatcatagacagtgatgatgaagcggacattctggaggataaatcagtacacaacatt
aaagttgaggatcaatcaactttgcaagagaacactggggaccctacaactgattgcaat
ccttcacagggttcaaatgagaagtttctttgcactgcctgtgataaagtggctgttgaa
gcgcactcacatccacttttgaaagtaatagtttgcaaagactgtaaattcttaatggag
gaaaagatgcatgcgaaggatcctgactgttctgggtgttactgtggatggtgtggacgg
aacattgaattggtaagttgtaagtcatgcagaacattattctgcactgcttgtataaaa
cggaacattggtgaagagtacttgcctaaggttccagcttctggttggcaatgttgttgt
tgctctccaagtctgctacaaatgcttacattacaattagagaaagccgtggggtctggc
gatacaatgattacgagctctgacagtgattcagagtcctcagatacagatggtggtgtt
acaatcagatctaagagaaagaagaaaaagaagatcagaaggatcattgatgatgctgaa
ttaggagaagagaccaagagaaaaattgctattgaaaaggaacgtcaagaacgcttgaaa
tccctgaaagtacagttttctgacaaatccaagatgatcaatcctgcaagctgcagtgga
aacttaactgaaggtgctagtgttgaagtgcttggtgatgccacaacaggttatattgtg
aatgtcgtgagggaaaaaggtgaagaagctgtgaggattcctccaagcatttcgtctaaa
ttgaaagcccatcaggtggcagggataagatttttgtgggaaaatattatacagtcaatt
ggaaaagcaaggtctggtgataaaggtcttggttgcattttagcgcatatgatgggcctt
ggtaaaacttttcaggtcatagcttttctgtacactgccatgagaagtgttgatctgggt
ttgagaacagtgctcattgtgactcctgtgaatgtgctgcataactggcgcaaggagttc
atgaagtggacaccttcagaagtaaaaccactccgtgttttcatgctggaggatgtgtcg
agggagagaagagcggaattgcttgcaaagtggagagctaaaggtggtgtattcttgatt
ggctactctgcctttcgtaacttaacccttggaaagaatgtgaaggaaccaaaattggct
agagaaatttgtaatgccttgcaggatggacctgatatacttgtttgtgatgaagctcat
ataatcaagaataccagggctgatacaacccaagcactgaaactcgtgaaatgccagaga
aggatagcattaactggatcacctcttcagaacaatctaatggagtattattgtatggtt
gattttgtaagagaaggttttcttggcagcagccacgagttcaggaatcgtttccaaaat
cctatagaaaatggacaacatactaattcaatggttgatgatgtaaagattatgaaccag
agatctcatattctctatgaacaattgaaagggtttgttcaaagaatggacatgagcgtg
gtgaagaaagacctgccacctaaaactgtatttgtagtggctgtaaagctttctccatta
cagaggaaattgtacaagagattccttgatgtgcatgggttcacaaatggcagggtttcg
aatgaaaagatgaggaagagcttttttgctggttaccaggcattggctcagatatggaac
catcctggaatattgcaattgaggaaaggtagagattacattggccgtgaggacaatgtt
gagaatgttcttgcagatgactgctctagtgatgaaaatgtagattacaatacaattgtt
ggagagaagtcaaggaatcaaaatgatttcgttcaagggaaaagtgatgatggatttttt
caaaaggattggtggaatgatcttctgcatgaaaataattataaagtgattgattatagt
ggcaaaatggtattgctgcttgacattttagtcatgtcttctaatgggggtgataagaca
ttggtttttagccagagcatacccactttagatcttatagagctttatctttcaagatta
actcgacatgggaaaaaggaaaaattctggagaaaaggaaaggactggtataggctagat
ggaagaacagagagctctgaaaggcaaaggttggttgagaggttcaatgatcccgagaat
aagcgggtcaaatgtactttgatttctactagggctggttctctcgggattaatctctat
gctgctaaccgggtgattattgttgatggttcttggaatccgacatatgatcttcaggcc
atatatcgggcttggaggtatggccagactaagccagtgtttgcttacagattaatggca
catggaaccatggaggaaaaaatctataagcgtcaggtcacgaaggaaggacttgctgca
agggtggtggatagacaacaagtatataggaccatgtccagagaagaaatgttgcatctt
tttgaatttggtgatgatgagaaatctgacacactaaatgacattggccaagaatacaga
catgcagataccaggaatgttacctgccaaaccgtaaattctttgaaagagaacattcct
tgttctcatggaagctgctcatctgataagttaatggaaagcttgcttgacaagcaccgt
cagaggtggatttttgattaccatgaacatgagacccttttgcaagagaatgaagaggaa
aaactaacaaaggaggagcaagacatggcttgggaagtatacaagagatcattagaatgg
gaagaagtgcagcgagtttcccttgatgactctacatttgagcgaaagccacaaatgtca
aacggggcatcttctgccctagacactagcagcatacctttgccaagcatggcccctcct
gcatctgaggcttccaaagtagcaccatccaagagcattttaaggagtcgtgtggtgcag
cggaaatgcactaatctctctcatttgctaaccctaagaagtcagggcacaaaagctggg
tgcactaccgtctgcggggaatgtgcccaggagataagttgggaagatctgaatcgggag
ggtaaggcagcacggtaa
DBGET
integrated database retrieval system
