Populus nigra (Lombardy poplar): 133668522
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Entry
133668522 CDS
T10372
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133668522
Transcription machinery [BR:
pnz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
133668522
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GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
HTH_36
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
133668522
NCBI-ProteinID:
XP_061944411
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Position
11:10065072..10069454
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AA seq
509 aa
AA seq
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MMATAAVIGLSTGKRLLSSSFYYSDLTEKLSNANDHGITYYPTATTKNVVVAKKSSNYGP
SFPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALLLLQKSML
EKQWNLSFERTNSSDSTSKKNNKKIPVTCSGVSARQRRVNNRRKNQNQSKFMSQSSDFKF
LRSVISPDLLQNRLKGYVKGVVSDEVLPHTEVVRLSRIIRAGLSFEDHKSRLKERLGCEP
SDEQIADSLRISRADLQSKLIQCSLAREKLAMSNVRLVMSIAQKYDNMGAEMADLVQGGL
IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVDNSRTLRLPNHLHERLGLIRNAKIR
LEEKGVTPSIDRIAESLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
RPENNPWHGVDEWALKEEVNKLIDSTLQEREKEIIRLYHGLDQECLTWEDISKRMGLSRE
RVRQVGLVALEKLKHAARKRNTEAMLVKH
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgatggccacagccgcagttattggacttagcacaggaaagaggctcttgagttcctcc
ttttactattcagacctcacagaaaagctttccaatgccaatgatcatgggattacctac
tatccaaccgctacaacaaagaatgtagtagttgcaaaaaagtcatcgaactatggcccc
agcttcccttcatccaatcgaaattcacattccattaaagcccttaaagaacatgtggat
actgcttctgcttcttcaaatgtggcaacatggttcaagacatttgatgactttgaagaa
gagagctctgctctcgactattcggtagaagctctccttttgctgcagaagtctatgcta
gaaaagcaatggaatctttcttttgagaggacaaactcaagtgactcgacaagtaaaaaa
aataacaagaagatacctgtcacttgttctggggtgtctgctagacaacgaagggtgaat
aacaggagaaaaaatcagaaccaaagtaaatttatgtcacaaagtagtgattttaagttt
ctaagatcagttattagtccagatctgctgcagaatcgtttgaaaggttatgtgaagggt
gtagtgagtgatgaggtgctcccccatacagaagttgtgcgcttgtcaaggataattaga
gctggtctttcctttgaggaccacaagtccaggctaaaggagagattaggttgtgagccc
tcagatgaacaaattgcagattccttgaggatttctcgtgctgacttacagtcaaaattg
attcaatgttctctggcaagagagaaactagcaatgagcaatgttcgtctagttatgtct
attgctcaaaaatatgataacatgggtgctgaaatggctgaccttgttcagggaggtttg
attggactcctgcgaggtatcgagaaatttgattcttccaaagggttcaaaatctcaact
tatgtttattggtggatacgtcagggtgtctcaagagctttagttgataattcaagaacc
ttaagattgcctaatcatttacatgaaaggttgggcctgattcggaatgcaaagattaga
ctggaagagaaaggagtaactccatcaattgatagaattgcagaaagcttgaatatgtcc
caaagaaaagttaggaatgctaccgaggctataagtaaggtcttctcgcttgatagggaa
gcattcccctcgttgaatggtcttccaggagaaacacaccatagttacattgcagataat
cgccctgagaacaacccgtggcatggagtggatgagtgggcactgaaggaggaagtaaac
aagcttattgattctactcttcaagaacgagaaaaggagatcatacgtctttaccatggt
ttagatcaggaatgccttacatgggaggacattagcaagcgcatggggttgtctcgagaa
agagttaggcaagtcggacttgttgcattagagaaactaaaacatgccgcgaggaagagg
aatacggaggccatgttagtcaaacattaa
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