Populus nigra (Lombardy poplar): 133668567
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Entry
133668567 CDS
T10372
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133668567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133668567
03016 Transfer RNA biogenesis [BR:
pnz03016
]
133668567
Enzymes [BR:
pnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
133668567
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
133668567
Transfer RNA biogenesis [BR:
pnz03016
]
Prokaryotic type
tRNA degradation factors
133668567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
WHD_DUF6293
Motif
Other DBs
NCBI-GeneID:
133668567
NCBI-ProteinID:
XP_061944479
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All DBs
Position
11:10540080..10555545
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AA seq
931 aa
AA seq
DB search
MLANPSTSTLHHRPNYTHNPPCALSNHRCKLSLSPNCPRFSNSAKSNFSSLSLLLSRRKR
ERLFTFVNAFEETSVAHDAPQSLPQRFSVKIPVGDRHILVETGHIGRQASGSVTVTDGET
IVYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGKLKDHEVLICRLIDRP
LRPTMFKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNTKVIAGVRVGLVD
NKFIVNPTTKEMEESELDLLLAGTDSAIFMIEGYCNFLTEEKLLDAVQIGQDAVRAICNE
VGVLVKKCGKAKMLDAIKLPPAELYKHVEEIAGDELVKILQITSKVPRRKALASLEEKVL
SILTEKGYVSKDERFGTPETVADLLEVEDEDEEIVVDGEVDEGDVHIKPIGRKFSPLLFS
EVDVKLVFKEVTSKFLRKRIVEGGKRSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQ
SLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVE
RALKPILPSEDDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMGL
VLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPVMRKA
LLQARDGRKHILAEMLKCSPFPSKRLSKYAPLIHIMKVNPKKVNIIIGSGGKKVKSIIEE
TGVEAIDTRDDGIVKITAKDLSSIEKSKSIINQLTMVPNVGDIYRNCEIKSIAPYGVFVE
IAPGREGLCHISELTSNWLPKAEDVFKVGDRVDVKLIEVNEKGQLRLSRKALLPEATPEK
SSAEHHATDKASPRRIVQAPKDGLAEEYKDKDSAVNSPRSDSIKDAPVSKKKVYKGVTSS
ATEGPKNSVASVSSIASKDEGTLENGDAKIG
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgctagcgaatcctagcaccagtactctccatcacagacctaattacacacacaaccct
ccatgtgcactctctaatcatcgctgcaagctctctctctccccaaattgccctcgcttc
tccaattctgcaaaatccaacttttcttcgctttctctgcttctatcaagaagaaagcgt
gaaaggttgtttacttttgtcaatgctttcgaggaaacttctgtggcacatgacgcccct
cagtctttgcctcagcgtttttctgtcaaaatccccgtcggtgacagacatatattggtt
gagacgggtcatattgggagacaagctagtggttctgtcactgtgacggatggggaaact
attgtctatacatctgtttgtttggatgatgttcctagtgagccttctgatttttatcct
ctatctgtaaattatcaagagcgattttctgcagcaggtcgaactagtggaggatttttc
aaacgagaagggaagttgaaagatcatgaggttcttatttgtagattgatagataggcct
ttgcgcccaaccatgttcaagggcttctaccatgaaacccagatactatcttgggttttg
agctatgatggtttgcattctcctgattctttggctgtcacagcagctggaatagctgta
gctctttcagaagtaccaaatacaaaagtaattgcaggagttcgagttggccttgttgac
aataagtttattgtgaacccaacaaccaaggagatggaagagtcagaattggatttatta
ctggctggtacagacagtgcaatatttatgatagagggttattgtaattttcttacagaa
gaaaagttgcttgatgcagtacaaattgggcaggatgcagtgcgggcaatttgcaatgag
gtgggtgttttggtgaagaagtgtgggaaagctaaaatgcttgatgcaatcaaattacct
cctgctgagctgtataagcatgtggaggaaattgctggtgatgaattggtgaaaatattg
caaattacaagcaaagtaccaagaagaaaagcccttgcatcgctggaagaaaaggtgctt
agtatacttacagaaaagggatatgtaagcaaggatgaaaggtttggaacccctgaaaca
gttgcagacttgctagaggttgaagatgaggatgaggaaattgttgtagatggtgaagtg
gatgaaggtgatgtccacataaagccaattggacgcaaattctctcccttgttgttttct
gaggtagatgtgaagctggtatttaaagaagttacatccaaattcttgcggaaacggatt
gttgagggaggaaaaagaagcgacgggagaactccagacaggatacgtccaattgattcc
agatgtggaatacttcccagagcacacggaagtgctcttttcacacgtggggaaacacag
tcattagcagttgttacacttggtgataaacaaatggcacaaagagtagacaaccttgtg
gacgaagaggaattcaagaggttctatctacagtacttgtttcctccatcatgtgttgga
gaagtgggccggataggagcacctagtagaagagaaatcggtcatggaatgctcgtggag
agagctctcaaacctatattgccttctgaagatgattttccttacacagtacgggttgag
agtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgcttg
gcattacaagatgctggtgttcctgtaaaatgcatgattgctgggattgcgatgggtttg
gttcttgacactgaggaatttgggggtgatggaacgcccctcattctgtctgacataact
ggatcagaagatgcttctggagacatggatttcaaggttgctggaaatgaagatggaata
actgcatttcagatggacataaaggttggaggaatcaccttacctgttatgagaaaggca
ttgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctcacct
ttcccttccaaaaggctttctaagtatgccccattgattcacattatgaaggtcaatcca
aagaaagttaacatcatcattggttctggtgggaagaaggtgaagagtataatagaagaa
actggagttgaggctattgacacacgagatgatggaattgtaaaaattactgcaaaggat
ttgtcaagtatagaaaagtccaaatccattatcaatcagctaacaatggttccaaatgtc
ggtgatatctacaggaactgtgagatcaaatccatagctccttatggagtttttgttgag
atagccccagggcgtgagggactttgccatattagtgaactaacttcgaactggttgcca
aaggctgaagacgttttcaaagttggagaccgtgttgatgttaaactaattgaggtaaat
gaaaagggacaacttcgacttagtcgcaaagcattgcttcctgaagccactccagagaag
tccagtgcagagcatcatgcaactgataaggctagtcccagaaggattgtgcaagcacca
aaggatggtttagctgaagagtacaaggataaagacagtgcagtaaattccccaagaagt
gattcaataaaggatgctccagtttcaaaaaagaaggtttacaagggagtaaccagttct
gccacagaggggccaaagaacagtgttgcatctgtcagtagcattgccagcaaagacgaa
ggtactttagagaatggagatgctaagattggatag
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