Populus nigra (Lombardy poplar): 133669382
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Entry
133669382 CDS
T10372
Name
(RefSeq) protein PIR-like isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133669382
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133669382
Factors involved in mRNA localization
Other mRNA localization factors
133669382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
133669382
NCBI-ProteinID:
XP_061945471
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Position
12:3795106..3815037
Genome browser
AA seq
1283 aa
AA seq
DB search
MAVPVEEAIAALSTFSLEDEQAEVQGAGVLVSSERGATNSPIEYTDVSAYRLSLSEDTKA
LNQLNGLIQEGKEMASVLYTYRSCVKALPQLPESMKQSQADLYLETYQVLDLEMSRLREI
QQWQASASSKLAADMQRFSRPERRINGPTITHLWTMLKLLDVLVQLDHLKNAKASIPNDF
SWYKRTFTQVSVQWQDIDSIREELDDLQIFLSTRWAILLNLHVEMFRVNTVEDILQVLIV
FAIESLELDFALLFPERHILLRVLPVLVVLATSSEKDSESLYKRVKINRLINIFKNDPII
PAFPDLHLSPAAILKELSIYFQRFAAQTRLLTLPAPHELPPREAQDYQRHYLIVNHIGTI
RAEHDDFTIRFASSLNQLLLLKSIDGADVDWCKEVKGNMYDMVVEGFQLLSRWTARIWEQ
CAWKFSRPCKDAIPSESNGTSESFFDYEKVVRYNYSAEERKALVELVSYIKSVGSLMHRC
DTLVADALWETIHAEVQDFVQNTLATMLKTTFRKKKDLSRIVSDMRTLSADWMANTNKPE
SYLQSHGGDESKGNFFYPRPVAPTATQVHCLQFLIYEVVSGGNLRKPGGLFGNSGSEIPV
NDLKQLETFFYKLGFFLHILDYSATVATLTDLGFLWFREFYLESSRVIQFPIECSLPWML
VDQVLESQNAGLLESVLMPFDIYNDSAQQALAALRQRFLYDEIEAEVDHCFDLFVSKLCE
IIFTYYKSWAASELLDPSFLFASDNREKYSVQPMRFTALFKMTRIKLLGRTVDLRRLVSE
RMNKVFRDNLEFLFDRFESQDLCAVVELEKLVEILKHAHGLLSKDLSIDSFSLMLNEMQE
NLSLVSFSSRLATQIWSEMQNDFLPNFILCNTTQRFVRSSRVPLVPMQKPSVPCAKPNFY
CGTQELNSAHQSFARLHSGFFGIPHMFSTVRLLGSRSLPWLIRALLDHISNKVSTLEPMI
TGLQEALPKSIGLLPFDGGVTGCMRVVKENLNWGTKSELKAEVLRGIKEIGSVLYWMGLL
DVVLREVDTMHFMQTAPWLGLFPDADGQILLSQDGGDSPVVNLFKSATAAVMSNPGCPNP
TSFYTMSKQAEAADLLYKANMNTGSVLEYALAFTSAALDKYCCKWSAAPKTGFIDITTSK
DFYRIYSGLQIGHLEDSVQVSSNFEVLGDSVAWGGCTIIYLLGQQMHFELFDFSYQVLNV
AEVEAGLLTQAHKNPHVAQGWETLLEAMKKARRLNNHVFSMLKARCPLEDKIACAIKQSG
APLHRIKFENTVSAFETLPQKGA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcagttccagtagaagaagccatagcagctctctctaccttttctcttgaggatgag
caagcagaggtgcaaggagccggggttttggtttcatctgaaagaggagcaaccaacagt
cctattgagtatactgatgtttctgcttaccgcttatctctatcagaagacacaaaagct
ctcaatcagctgaatggacttatccaagaggggaaggagatggcatcagtgctttataca
tatcgtagctgtgtcaaagcacttcctcagcttcctgaatccatgaagcaaagtcaggct
gacttgtatctggaaacatatcaagttttggacttggagatgagtcgtctgcgtgaaatc
cagcaatggcaagcatctgcttcatcaaaactagcagctgatatgcagcggttttctagg
cctgagcggcgcattaatggccccacaattactcatctatggaccatgttgaagttgctt
gatgttttagttcaacttgatcatcttaaaaatgctaaggcaagcatacctaatgacttc
tcatggtacaagaggacatttacccaagttagtgttcagtggcaagatattgattcaata
agggaggagttagatgatttacagatattcttaagcacaaggtgggcaatcttattgaac
ttgcatgtcgaaatgtttcgggtgaacactgtagaagatattcttcaagttctgatagtt
tttgccattgagtcattggaattggattttgcgcttttgtttccggagaggcacattctt
ctacgtgttttaccagttcttgttgtcttggcaacttcatcagaaaaagacagtgagtca
ctgtataagagggtaaaaatcaacaggctgataaatatttttaagaatgatccgatcatt
cctgccttccctgatcttcatctttctcctgctgcaatcttgaaagagctgtccatttac
tttcagagatttgctgcacaaactcgtctcctcacgcttccagcacctcatgagctccca
cctcgggaggcacaagattatcagaggcattatctcattgttaatcacatcggaactatt
cgtgccgagcatgatgatttcacaattcgttttgcttcatccttgaatcagctattgtta
ttgaagtcaatagatggtgcagatgttgactggtgcaaagaagtcaagggaaacatgtat
gatatggttgttgaaggtttccagctcttaagcagatggactgcacgaatttgggaacaa
tgtgcttggaaattttctcgcccatgcaaagatgcaattccttcagaatctaatggaacc
tcagaatcattttttgactatgaaaaggtggtacgatataattacagtgctgaggagagg
aaagcacttgttgagctcgttagttacattaagagtgttggatcactgatgcatcggtgt
gacacattggtagctgatgccttatgggaaacaatacacgctgaagtccaagattttgtc
caaaacacattagccaccatgttgaagactacctttagaaagaagaaggacctgtcgagg
attgtttctgacatgaggactctttcagcagactggatggcaaatacaaacaagcctgaa
tcttatttacagtcacatggaggtgatgaaagcaaagggaacttcttttatccaaggcca
gtggcacccacagccacacaggtccattgcttgcagttcttgatatatgaagtggtgtct
ggtggtaatcttcggaagcctggtggactctttggcaacagtgggtctgagattcctgta
aatgatttaaagcagttggagaccttcttttacaagcttggcttcttcctgcatatattg
gactattcagcgactgttgcaacattgacagatcttggtttcttatggtttagagaattt
tatttggagtcatctcgtgtgattcagtttcctattgaatgttctcttccctggatgctg
gtagatcaagtgctcgagtcccagaatgcaggtcttcttgaaagtgttctgatgccattt
gacatctacaatgattcagctcagcaagctctggctgccttaaggcagcgattcctctat
gatgaaattgaggctgaggtggaccattgttttgatttatttgtttcaaaactctgtgaa
attattttcacttattacaagagttgggcagcaagtgaactacttgatccatcattcctc
tttgcctcagacaatagagaaaaatattctgtacagcctatgaggttcactgcactattt
aagatgactagaataaagttacttgggaggaccgttgatttaagaaggttggtttctgaa
aggatgaacaaggtttttagagacaatctcgagtttctttttgatcgttttgagtctcag
gatctatgtgcagtggtggaattagaaaaacttgtggaaatcttaaagcatgcccatggc
ctgctttcaaaagatctttcaatagactcattcagtctcatgttgaatgagatgcaagaa
aacttatctcttgtgtcattttctagtcgacttgctactcagatttggtcagagatgcaa
aatgatttcctgccaaacttcatcctatgcaacactactcagcgttttgtccgatcatca
agagttcctcttgttcctatgcaaaagccgtcagttccctgtgcaaagcctaacttctat
tgtggtactcaggagttgaattctgcgcatcaaagctttgcgcgtttgcacagtgggttc
tttggaattccccacatgttttctactgttagacttctaggatccagatcattgccttgg
cttatccgggcgctgctagatcatatatcaaataaggtaagtacacttgaaccgatgatt
actggattgcaagaagcgttgccaaaatctattggactgctcccttttgatggaggagtc
acaggctgtatgagggttgtcaaagaaaatcttaactggggaacaaaatcagagctcaaa
gcagaggttcttcgaggaataaaggagattggcagtgtgttatattggatggggcttcta
gatgttgtattgagggaagttgataccatgcatttcatgcaaacagccccttggttgggc
ttgtttcctgatgcagatggtcaaatattgctttcacaggatggtggggatagtcctgtt
gtcaatcttttcaaatcagccaccgctgcagtcatgtccaaccctggttgtccaaatcca
acatctttttataccatgtcaaaacaggcagaagctgcagatcttctttacaaagctaac
atgaatactggaagtgtgctggaatatgcccttgcttttaccagtgctgcattggataaa
tattgctgtaaatggagtgctgctcccaagacagggttcattgacattacaacttcaaag
gatttttaccgtatatatagtggccttcaaattggacacctggaggattctgttcaagta
tcatcgaattttgaagtgttgggtgactcagttgcttggggtggttgtaccattatctac
ttgcttgggcagcagatgcattttgaactctttgatttttcgtatcaagtcctcaatgtt
gcagaagtagaggctggattactcacccaagcacataagaatccccatgttgcccaggga
tgggaaaccctattagaagcaatgaagaaagcaagaaggttgaacaatcatgttttctca
atgctaaaagcccgttgccccctcgaggacaagatagcttgcgctatcaagcaaagcggt
gcccctctgcatcggattaagttcgagaacactgtttcagcatttgaaacattgcctcaa
aaaggtgcctga
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