Populus nigra (Lombardy poplar): 133669441
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Entry
133669441 CDS
T10372
Name
(RefSeq) protein CHROMATIN REMODELING 20-like isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133669441
03036 Chromosome and associated proteins [BR:
pnz03036
]
133669441
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
133669441
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
133669441
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ADD_ATRX
Motif
Other DBs
NCBI-GeneID:
133669441
NCBI-ProteinID:
XP_061945566
LinkDB
All DBs
Position
12:complement(3641819..3659962)
Genome browser
AA seq
1490 aa
AA seq
DB search
MEDKHEEVEDIESGLSDSFIDDDDEDSNNDDDNEPSTSGQDDGTRIQVQEPLTDQEVEEL
VAEFLEVESKAAEAQEALEKESLAKVESDVREELAQSLQGDDLEAAVENEMATFREEWEN
VLDELETESYHLLEQLDGTGIELPNLYKWIESQAPNSCCTEAWKRRAHWVGTQMTNETTD
TVADAEKYLQIHRPVRRKHGKLLEEGASGFLQKKLAMDGSEAIAENGEVDWASMKKLFST
SSSEDVASFGSKHWASVYLANTPQEAALMGLKFPGVNEVEEIEDIDGNSTDPFVAEAIAN
EKELVLSEEQRKNYRKVKEEDDAKIDQKLQLRLKQRRRLKRCKQGVSSVVQEMGTNMAES
LPLDDNYHEVTCQDLKKDVCENSGDLDMEQLMSESNSVFPESDASEPRRSKRPNENEDLS
INNKKIRTVIIDSDNEADILEDKSVHGIKVEDQSTLLENIGDPSAGCNPSQGSSEKFQCT
ACDKVAVEVHSHPLLKVIVCKDCKFLMEEKMHVKDPDCSECYCGWCGRNNDLVSCKSCRT
LFCTACIKRNIGEEYLYKVPVSGWQCCCCSPSLLQRLTSQLEKAMGSGDIMVSSSDSDSD
SSDTNDGVTISSKRKKKKKIRRIIDDAELGEETKRKIAIEKERQERLKSLKVKFSDKSKM
MNFASCSGNLPEGASVEVIGDATTGYIVNVAREKGEEAVRIPPSLSSKLKAHQVAGIRFL
WENIIQSIRKVKSGDNGLGCILAHTMGLGKTFQVIAFLYTAMRGVDLGLRTALIVTPVNV
LHNWRKEFMKWTPSEVKPIRVFMLEDVSRERRVELLAKWRAKGGVFLIGYSAFRNLSLGK
NVKERNMAREMCSALQDGPDILVCDEAHIIKNTRAETTQALKLVKCQRRIALTGSPLQNN
LMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTVDDVKIMNQRSHILYEQLKGF
VQRMDMSVVKKDLPPKTVFVVAVKLSPLQRKLYKRFLDVHGFTNGRASNEKTSKSFFAGY
QALAQIWNHPGILQLRKGREYVGNVENFLADDCSSDENVDYNTIVEEKSRNPNDFIQGKN
DDGFFQKDWWNDLLLENNYKEVDYSGKMVLLLDILVMSSDVGDKVLVFTQSIPTLDLIEL
YLSRLPRLGKKGKFWRKGKDWYRLDGRTESSERQRLVERFNDPKNKRVKCTLISTRAGSL
GINLYAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLMAHGTMEEKIYKRQVTK
EGLAARVVDRQQVYRTISREEMLHLFEFGDDENSDTLIDIGQEYRQADTRNISCQTANSL
KQNASRSHGSCASDKVMESLLGKHRQRWIFDYHEHETLLQENEEEKLTKEEQDMAWEVYK
RSLEWEEVQRVSLDDSTFERKPPMSNGASSAPDASSIPVPSMACPASEASNAAPSQSILR
SRMVQRKCTNLSHLLTLRSQGTKAGCTTICGECAQEISWEDLKREGKAAR
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaacacgaggaagttgaggacattgagagtggtttaagtgattcatttatt
gacgacgacgacgaagattctaataatgatgatgataatgaaccttctacatctggacaa
gatgatgggacccgtattcaggtgcaggaacctttgaccgaccaagaagtagaggagttg
gttgctgagtttctggaagttgagagtaaggctgcagaggctcaagaagcactggaaaag
gagtctcttgcaaaagtagagagtgatgtgagagaggagttggcacaaagtctccagggt
gatgatctggaggcagctgttgaaaatgagatggctactttcagggaagagtgggaaaat
gtgcttgatgagctcgagactgagagttatcatttgttggaacaacttgatgggactggt
attgagctgccaaacctttataagtggattgagagtcaggctccaaacagttgctgcact
gaagcttggaaaagaagggcacactgggtgggaactcagatgaccaatgaaacgactgat
acagtagctgatgctgagaaatatcttcaaatccataggcctgttagacgaaaacatggt
aaattattggaggagggtgcaagtggatttctgcagaaaaaacttgcaatggatggaagc
gaggctattgcagaaaatggagaagtagattgggcctctatgaagaaactattctcaact
agcagttctgaggatgttgcttcatttggcagcaagcattgggcttctgtttaccttgcc
aacactccccaggaagctgcacttatgggacttaaatttcctggagtcaacgaggttgag
gagattgaagacattgatgggaattccactgatccatttgttgcagaggccatagcaaat
gaaaaggaattagttctttcagaggaacagagaaaaaattacagaaaggtcaaagaggaa
gatgatgcaaaaattgatcagaaacttcaacttcgtttgaaacaaaggagacgtcttaag
agatgtaaacagggtgtcagctcagtcgtccaggaaatgggaacaaacatggctgagtca
ttgcctctggatgacaattatcatgaggtcacatgccaagatttgaagaaagacgtgtgt
gaaaattctggagaccttgatatggaacagttgatgagtgagagcaattcggttttccca
gaatctgatgcctctgaacccagaaggtccaagcgtccaaatgagaatgaggacctaagc
atcaataataagaagattcgaactgttatcatagacagtgacaatgaagcagacattttg
gaggataaatcagtacacggcattaaagttgaagaccaatcaactttgctagaaaacatt
ggggatccttctgctggctgcaatccttcacagggttcaagtgagaagtttcagtgcact
gcctgtgataaagttgctgttgaagtgcactcacatccacttttgaaagtaattgtttgc
aaagattgtaaattcttaatggaggaaaaaatgcatgtgaaggatcctgactgttctgag
tgttactgtggatggtgtggaagaaacaatgacttggtaagttgtaagtcgtgcagaaca
ttattctgcactgcttgtataaaaaggaacatcggcgaagagtacttgtataaggttcca
gtttctggttggcaatgttgttgttgctctccaagtctgctacaaagacttacatcacag
ttagagaaagccatggggtctggagatataatggtttcaagttctgatagtgattcagac
tcttcagatacaaatgatggtgttacaatcagctctaagagaaagaagaaaaagaagatt
agaagaatcattgatgatgctgaattaggagaagagaccaagagaaaaattgctattgaa
aaggaacgtcaagaacgcctgaaatccctgaaagtcaagttttctgacaaatccaagatg
atgaattttgcaagctgtagcggcaacttacccgaaggtgctagtgttgaagtgattggt
gatgccacaactggttatattgtgaatgttgcgagggaaaaaggtgaagaagctgtgagg
attcctccaagcttatcatctaaattgaaagcccatcaggtggcagggataagatttcta
tgggaaaatattatacagtcaattagaaaagtgaagtctggggataatggtcttggttgt
attttagcacatacaatgggccttggtaaaacttttcaggtcatagcttttctgtacact
gccatgagaggtgttgatctgggtttaagaacagcactaattgtgactcctgtgaatgtg
ctgcataactggcgcaaggagttcatgaagtggacaccttcagaagtaaagccgatccgt
gttttcatgctggaggatgtgtcgagggagagaagagtggaattgcttgcaaagtggaga
gctaaaggtggtgttttcttgataggctactctgcctttcggaacttatctcttggaaag
aatgtgaaggaacgaaatatggctagagaaatgtgtagtgccttgcaggatggacctgat
atacttgtttgtgatgaagcccacatcatcaagaacaccagagctgaaacaacccaggca
ctgaaacttgttaagtgccagagaaggatagcattaactggatcacctcttcagaacaat
ctaatggagtattattgtatggttgattttgtaagagaaggttttcttggcagcagccac
gagtttcggaaccgcttccaaaatcctatagaaaatggacaacataccaattcaacggtt
gatgatgtaaagataatgaaccaaagatctcatattctctatgaacaattgaaagggttt
gttcaaagaatggacatgagtgtggtgaagaaagacctgccacctaaaactgtatttgta
gtggctgtaaagctctcgccattacagaggaaattgtacaagagattccttgatgtgcat
gggttcacaaatggtagggcttcaaatgaaaagacaagtaagagcttttttgctggttac
caggcattggctcagatatggaaccatcctggaattttgcaattgaggaaagggagagaa
tatgttggcaatgttgaaaactttcttgcggatgactgctctagtgatgaaaatgtggac
tacaatacaattgtcgaagagaagtcaaggaatccaaatgattttattcaagggaaaaac
gatgatggattctttcaaaaggattggtggaatgatcttctacttgaaaataattataaa
gaggttgattacagcggcaaaatggtattgctgcttgacattttagtcatgtcttctgat
gtgggtgataaggtgttggtttttacccagagcatacccactttagatctgatagagctt
tatctttcaagattacctcgacttggaaaaaagggaaagttttggagaaaaggaaaagac
tggtataggctagatggaagaacagagagctctgaaagacagaggttggttgagaggttc
aatgatcccaagaataaacgggtcaagtgtactttgatttctaccagggctggttctctt
gggattaatctctatgctgctaaccgggtggttattgttgatggctcttggaatccaaca
tatgatcttcaggccatatatcgggcttggaggtatggccagactaagccagtatttgct
tacagattaatggcacatggaaccatggaagaaaaaatctataagcgtcaggtaacaaag
gagggacttgctgcaagggtggttgatagacaacaagtatataggactatctccagagaa
gaaatgttgcatctttttgaatttggtgatgatgagaactcagacacactgattgacatt
ggccaagagtatagacaggcagataccaggaatatttcttgccaaaccgcaaattctctg
aaacagaatgcgtctcgttcccatggaagctgtgcttctgataaggtgatggaaagcttg
cttggcaagcaccgtcagaggtggattttcgattaccatgaacatgagactcttttgcaa
gagaacgaagaggaaaaactaacaaaggaggagcaagacatggcttgggaagtatataag
agatcattagaatgggaagaagtgcagcgagtttcccttgatgattccacttttgagcga
aagccacccatgtcaaatggggcatcttctgccccagatgcaagcagcatacctgtgcca
agcatggcctgtcctgcatctgaggcttccaatgcagcaccttcccagagcattttaagg
agtcgtatggtgcagcggaaatgtactaatctctctcatttgctgacccttagaagtcag
ggaacgaaagctgggtgcactactatatgtggggaatgtgcccaggagataagctgggaa
gatttgaaacgggagggtaaggcagcacggtaa
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