Populus nigra (Lombardy poplar): 133669460
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Entry
133669460 CDS
T10372
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1-like isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
133669460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133669460
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
133669460
SWR1 complex
133669460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
ETC_C1_NDUFA5
Motif
Other DBs
NCBI-GeneID:
133669460
NCBI-ProteinID:
XP_061945592
LinkDB
All DBs
Position
1:28778853..28793831
Genome browser
AA seq
2026 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAHA
KKVALRASKGMLDQATRGEKKLKEEEQRLRKVALNISKDVKKFWVKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDKPSEQYAAQDKPRIAYKKGDDANIPEQVN
DESQLDTTDNDDEYDVQSEDEVEDDEHTIEEDEALITAEERQEELEALHNETDIPLEELL
NRYPVEKGSRESSENGAKPSANGEDHCERKGNNMSAASDMEISCSPVNASRRCGENNGAL
PIPDNDLLEIRTNETRNQLSISDDPAKERVPYDFSDEQEDGDFDLAAEEEKDDETTLLEE
EELAKADSKNPIDEISLLQKESEIPLEELLARYTKEPNNEVSEDESEYASLLSDNVSNSP
GHEDELKQLDNSMDGIVECGNHPLVEEQEKGNEKISEDGRESENRIADAAAAARSAQPTG
NTFSTTKVRTKFPFLLKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLA
HLACEKGIWGPHLIVVPTSVMLNWETEFFKWCPAFKILTYFGSAKERKCKRQGWLKPNSF
HVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPL
QNDLMELWSLMHFLMPHIFQSHQEFKDWFSNPITGMVEGQERVNKEVVDRLHNVLRPFIL
RRLKRDVEKQLPMKHEHVIYCRLSRRQRNLYEDFIASSETQATLATANFFGMISIIMQLR
KVCNHPDLFEGRPIISSFDMAGIDMQLSSSVCSMLSPGPFSSVDLCALGLIFTHLDFSMA
SWEYDEVKSIATPSRLIKERSNLDNIEEVGLGSKHWKKLPGTNIFEEIRKSLLEERLREV
KQRAASIAWWNSLRCQKKPIYSTTLRELLTVKHPIYDVHRHKTERLSYLYSSKLGDVILS
PIERFQKMTDLVESFMFAIPAARTPVPVFWCSQTRTPVFLHSTYEEKCSEMLLPLLSPIR
PAIVRRQLYFPDRRLIQFDCGKLQELAILLRKLKSEGHRVLIFTQMTKMLDILEVFMNLY
GYTYMRLDGSTQPEERQTLMQRFNTNPKIFIFILSTRSGGVGINLVGADTVIFYDSDWNP
AMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFK
KLNPMELFSGHKTLQIKNMQREKNHNNGNEVSLSNADVDAALKYAEDEADYMALKKVEQE
EAVDNQEFTEEAIGRLEDDEFVNDDDMKADEPTDHEMTTYSKDGAVNLKENGCIEERAVT
LTGNEDVDMLADVKQMAAAAAAAGQAISSFENQLRPIDRYAVRFLELWDPIIDKSALESQ
VGFEETEWELDRIEKYKEEMEAEIDDDEEPLVYERWDADFATEAYRQEVEALTQHQLLEE
QEAEANEKEGADDGHLDAMVYKMPRNPKLKSKKKPKKAKFKSLKKESLTSELKHVKEEAS
METLSVDDDDDDDDDDGTYSDTMSPCSSMWRKRKKAESAIGIDKTRSKKTKKFKKGPEMC
TFSVDSDLSGKHHDRFTELKPFEVLVSDIEQKPASRSKMGGKISISTMPVKRVLMIKPEK
LKKGNVWLKDCVPPPALWMPQEDAVLCAVVHEYGPHWSLVSEILYGMTAGGFYRGRYRHP
VHCCERFRELIHRYVLFSPENPINNEKMSNMVPGKALLKVTEDNIRMLLNVVAEQPDHEL
LLQKHFTALLSSVWRVKSRVENQQNMPSSRNALYNSGRVFNSSVNPLPWNSLRESAKRMK
FTNLGQSTKLLAAALHDASSRRPGDRVSNSNVNEEAPAVGEKLEITLEFQKEENDYVIPF
PPVISLSIPGSAPWTSVNKAAHHLRASTNIAENRFRDAARASSSVLPANDLKLWLASKTQ
SLGKHKLSVSESTKPPRSKTRKTLLEQNEGHAELVMQPLSVRDPNLRFDLPPEVIQDDKD
GFSISFMEKELSVETRISEAVPHNYVPDLISGLDDYSLLPEYTDIG
NT seq
6081 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaaaggcccaaggtctaagcttgatcacgagaccagagctcggcgtcaaaag
gcactggaagctccgagggagccgcgtcgccctaagactcactgggatcacgtcttagag
gaaatggtttggttgtcgaaggactttgagtcggagaggaaatggaaattggcacatgcg
aagaaagtggcattaagagccagtaagggcatgttggatcaggccaccagaggagagaag
aaactgaaggaagaggagcagcggctgcgaaaagttgctcttaatatttcaaaggatgta
aagaaattctgggttaaaatagaaaagctggtactttacaagcatcagatggagcttgat
gagaagaagaaaaaggcacttgataagcagcttgagtttcttctaggacaaactgagagg
tactctacaatgttagcagaaaatctagtggacaaaccatcagagcaatatgctgcacaa
gataaaccgagaattgcatacaagaaaggagatgatgctaatatacctgagcaagtcaat
gatgagtctcagttggacactacagacaatgacgatgaatatgatgtgcaatctgaagat
gaagtggaagatgatgagcatactattgaggaagatgaggctcttataactgcagaagaa
aggcaagaagaattggaagctctgcacaatgaaacagatattccactcgaggagctactt
aaccgttatcctgtagagaaaggtagcagagaaagtagtgaaaatggagctaagccatct
gcaaatggggaagaccattgtgagaggaaaggaaacaatatgtctgctgctagtgacatg
gagataagctgctcacctgttaatgctagtcgtcgttgtggtgaaaataatggtgccttg
cccattccagacaatgacttattggaaatcaggaccaatgaaaccagaaatcagttaagt
atttctgatgatccagccaaagaacgtgtgccatatgatttcagtgatgaacaggaagat
ggtgattttgatcttgctgcagaagaagaaaaggatgacgagacaaccttgttggaagag
gaagagctggcaaaagcagattcaaagaatcccatagatgagatctcattgctgcaaaag
gagagtgaaatccctttggaagaattgcttgcaaggtataccaaggagcctaacaatgaa
gtttcagaggatgaatctgaatatgcatctttattatcagacaatgtgtcaaattcccca
ggccatgaagatgaactgaagcagctggataactcaatggatggaattgttgaatgtgga
aaccatcctcttgtagaagaacaagaaaagggaaatgaaaaaatttcagaagatggaagg
gagagtgagaataggattgctgatgctgctgctgctgcaagatctgcacaaccaacaggc
aatacattctcaacaactaaagtgcgcacgaagttcccttttcttcttaagtaccctctt
cgtgaatatcaacatataggccttgattggcttgttacaatgtatgagaaaagattaaat
gggattctagctgatgaaatggggcttggaaagacaatcatgactattgctttgcttgca
cacctggcatgtgaaaaggggatatggggtcctcatctgatcgtggttcccacaagtgtc
atgcttaactgggaaacagagttttttaaatggtgtcctgccttcaagattttaacatat
tttggcagtgcaaaagagcgtaaatgcaagaggcaaggttggctgaaaccgaactccttc
catgtatgcataacaacttacagactggttatacaggattcaaaagtcttcaaaaggaag
aaatggaagtatttgatattggatgaagctcatctgattaaaaattggaagtctcagaga
tggcaaactcttttaaactttaattcaaaacgacgaatcttattaactggtacacctctg
cagaatgatctcatggaactctggtcactgatgcatttcttgatgccccacatctttcaa
tctcaccaggaattcaaggactggtttagcaatccaataactgggatggtggagggacaa
gaaagagtgaacaaagaagttgttgatcgtttgcataatgttctccgtccattcatcctc
cgtcgattgaaaagggatgtggagaagcagctgcccatgaaacatgagcatgtcatctat
tgtagactttcaaggaggcagcgtaacttgtatgaggatttcattgctagctcagagaca
caagctacccttgccactgccaacttttttgggatgatcagtatcataatgcaacttcgt
aaagtttgtaaccatcctgacttatttgagggtcgtccaattattagttcttttgatatg
gctggtatagacatgcaattaagtagttctgtttgttcaatgctttcacccgggccattt
tcatcagtagatctttgtgctttggggcttatatttactcatcttgattttagcatggcc
tcttgggagtacgatgaagtaaagtctattgcaactccatcaagattaattaaagagcgc
tccaacctggataacatagaagaagttggactgggatctaaacattggaagaagttgcct
ggaacaaatatttttgaagagattagaaagtcattattggaggagagattaagagaagtg
aagcaacgggcagcatctattgcatggtggaattccttgaggtgtcagaaaaaacccata
tactcaacaaccctacgagaacttctcacagtgaagcatcccatctatgatgtccatcgc
cataaaactgagcgactctcctacttgtactcttctaagctgggtgatgttattctttca
ccaattgaacggtttcagaagatgactgatctcgtggaatcatttatgtttgcaattcca
gcagcacgtaccccagtacctgtcttctggtgtagtcagactagaactccagtgtttctt
cattcaacttatgaggagaaatgctctgaaatgttgttacctcttctttcacctatcaga
cctgcaattgttcggagacaactttattttccagacaggcgtctaatacagtttgactgt
ggtaaattgcaggagcttgcaattttgctcaggaagttgaagtcagaaggacaccgggta
ttaatattcacacagatgactaagatgcttgatattttggaggttttcatgaatttgtat
ggctacacttacatgcgcttagatggatccactcaaccagaggagagacaaacattaatg
cagcgtttcaacacaaatcccaaaatctttatcttcattttatcaacccgtagtggaggt
gttggcatcaatcttgttggggcagatactgtaatcttctatgatagtgactggaatcct
gctatggatcaacaggcccaagaccgctgccatcggataggacagacacgtgaagtacat
atctacaggttaatcagtgagagcaccattgaagaaaacatcttaaagaaagccaatcag
aagcgtgctcttgatgatctagtaatacagagtggagggtacaatacggaatttttcaag
aagctcaatcctatggaattattctcagggcataaaacacttcagattaagaatatgcag
agggagaaaaaccataacaatggaaacgaggtgtctttgtctaatgcagatgtggatgct
gctctgaaatatgcagaagatgaagcagattacatggcattgaagaaagtcgaacaggaa
gaggctgtagacaaccaagagtttactgaagaggccattgggagattggaagatgatgaa
tttgtgaatgatgatgatatgaaggctgatgagcctacagatcatgagatgacaacttat
agtaaagatggtgcagtgaatttaaaagagaatggttgcattgaagagagagctgtaact
cttactggcaatgaagatgttgatatgttggctgatgtcaaacagatggcggcggccgcg
gcggctgctggacaggctatctcatcctttgagaatcagctacgtccaatcgacagatat
gcggttcggtttctggaattgtgggatccaattatagacaaatcagccttggaatctcaa
gttgggtttgaggagaccgaatgggagcttgatcgtattgagaagtacaaggaggaaatg
gaagctgagattgatgatgacgaggaacctttagtttatgaaagatgggatgctgatttt
gcgactgaggcgtaccgacaagaagttgaggcattaactcaacatcagctgttggaagaa
caggaagctgaagctaatgagaaggaaggtgcagatgatggacatttagatgctatggtg
tataaaatgccacgtaatcctaaattgaagtctaagaagaaaccaaagaaagccaagttc
aaatctctgaagaaagaatctttgacttctgaattgaaacacgtgaaagaggaggcatca
atggaaactttgtctgtagatgatgatgatgatgatgatgatgatgatggtacatattcg
gatacgatgtctccttgttccagcatgtggagaaagcgtaagaaagcagaatcagcaatt
ggtattgacaaaacgaggtcgaagaagactaagaaattcaaaaagggtccagaaatgtgc
acttttagtgtagattcagacctgtctggaaagcatcatgacagatttacggaactaaaa
ccatttgaggttttggtttccgatattgagcagaagccagctagcaggagcaaaatggga
gggaaaatatccatcagtaccatgccagtgaaacgggttttgatgataaagccagagaag
ttgaagaaggggaatgtttggttgaaagattgtgttccaccacctgctttatggatgcca
caggaggatgctgtattatgtgctgttgtgcatgaatatggtccacattggagcttggtc
agtgaaattctgtatgggatgactgctggtgggttttatcggggaagataccgccatcca
gttcattgttgtgagagatttagggagctaatccacagatatgttttattttctccggaa
aatcctattaataacgaaaagatgagcaacatggtccctgggaaggcccttctgaaagta
accgaggataacatacggatgttgttaaatgttgttgctgagcagccagaccatgagtta
cttctccagaagcacttcacagcactgctttcttctgtgtggagggtgaaatctcgtgtt
gaaaatcaacaaaacatgccatcatctcgaaatgccctttataacagtggaagggttttc
aattcttctgtcaatccgttaccttggaactccttgagggaatcggcaaaaagaatgaaa
ttcactaatttgggacagagtactaagttgctggcagctgcactccatgatgccagcagt
agaaggccaggtgatagagtttccaattccaatgtgaatgaagaagctcctgctgtaggc
gagaagctggaaataacattggaattccaaaaggaggaaaatgattatgtgattccattc
ccacctgtaataagtttgtcaatacctggctcagcaccatggacgtctgtaaataaggcg
gctcaccatctcagggcatccacaaatatagctgaaaatcgattcagggatgcagcaaga
gcttcttcatctgtgttaccagcaaatgatttgaagttgtggctggcttcaaagactcag
tccttgggaaagcacaagctatctgtctctgagtcaaccaagcctcctaggtcaaagacg
aggaaaactttgctggagcaaaatgaaggacacgccgagctagtaatgcaaccactgtca
gttagggatcccaatttaaggtttgacctgccaccagaagtcattcaggatgataaggat
gggttttctatttcattcatggaaaaagaactttcagtggaaacgaggatctccgaagct
gtcccgcataactatgttcctgatttgatatcaggtcttgatgattattctttgttgccg
gaatacactgacattggatag
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