Populus nigra (Lombardy poplar): 133669475
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Entry
133669475 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133669475
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
133669475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133669475
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
133669475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GIY-YIG
Motif
Other DBs
NCBI-GeneID:
133669475
NCBI-ProteinID:
XP_061945621
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All DBs
Position
12:15482236..15485363
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AA seq
528 aa
AA seq
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MTRKRKTPKNPQELGEAEKGKNGFFACYLLTSLCPRFKGHTYIGFTVNPRRRIRQHNGEL
RSGACRTKKRRPWEMVFCIYGFPTNVAALQFEWAWQHPTESVAVRQAAAAFKSFSGVANK
IKLAYTMLNLPSWQSLNITINYFSTNYNVHSVGCPSLPKNMKVQICPMDELPCYCDSGNI
LFEERENEDAWDGEEEYERASDGSGTFEANLVELEVSSLDELPCYNGRGDNIFEGGYGET
ASREACNRSEPVHEKYNESVNTRGTVKEAHADIIVRITADFARSIDKTSNEHFRWFEEYD
QQDQRESPSPELDHANPFPFMTLLARKASSIVTSFSKSETGDRSVLTLIDEDVSELDCQR
AKKLVIDKDDEASNTCETVNVDTHSSVDAHCINKASREQFGQSEPYVMQDQREPPSPKLD
YAEPFGFMNQPSSKASSSIVTNFSARETRDGGVLTLIGEDASEFDWPRWKKLSCKVINDK
DQVLIPRSFIPREIEVIDLLSPSPECRIRSANKKRRVSPVYPVIIDLT
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaagagaaaaaccccaaaaaatcctcaagaactaggagaagcagagaaggga
aagaatgggtttttcgcttgctatctcttgacttctctctgccccagattcaaaggccac
acctacatcgggtttacagtaaatccgcggcggagaattaggcaacacaacggtgagctt
agaagtggagcatgcaggactaagaaaagaaggccatgggaaatggttttctgcatttat
ggtttcccaactaacgttgctgctttgcagtttgaatgggcgtggcagcacccaacagaa
tcagtggcagtgaggcaggcagctgctgcttttaaatccttctcaggagttgccaacaag
attaaacttgcttacacaatgcttaacctcccgtcttggcagagcttgaacatcaccata
aactatttctcaacgaactacaatgtacactctgttggttgtccaagcttgcccaagaac
atgaaggtccaaatttgccccatggatgagcttccctgctattgtgattcgggtaatatt
ttatttgaagagagagaaaatgaagatgcctgggatggtgaagaggaatatgagagagct
agtgatggaagtggaacttttgaggcaaacttggtggaacttgaagtttcctccctggat
gagcttccatgctataatggaaggggggataatatttttgaaggtggatatggtgaaacg
gcatccagggaagcttgtaacagaagtgagcccgtacacgaaaaatataatgaatctgtc
aacacacgaggaactgttaaagaagcacatgcagatattatagttcgtattactgcagat
tttgcacgtagcattgacaagacttccaatgagcatttcagatggtttgaagaatatgac
cagcaagaccaaagggaatcaccctctccagaactggatcatgcaaatccatttcctttc
atgactttactagcaagaaaagcttcttcaattgttactagcttttcaaagagcgagact
ggagataggagcgtattgacattgattgatgaggatgtttctgaattggattgccagagg
gctaagaaattagttattgacaaagatgatgaagctagcaacacctgtgaaactgtgaac
gtggatactcattcttctgtagatgcacattgtattaacaaggcttcccgtgaacaattt
ggacagtctgaaccatatgtcatgcaagaccaaagagagccaccctctccaaaactagat
tatgcagaaccatttggtttcatgaatcagccatcaagtaaagcatcatcttctattgtc
acaaacttttctgcgagggagactagagatgggggtgtattgacattaatcggcgaggat
gcttctgaatttgattggccaagatggaagaagctttcttgcaaagtaatcaatgataaa
gatcaagtcctgattccaaggtcattcattcctcgggaaattgaggttatagatttgctg
tccccatctccagaatgcagaattaggtcagccaacaagaagagaagagtttctcctgtg
tatccggtaattattgacttgacttag
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