KEGG   Populus nigra (Lombardy poplar): 133669510
Entry
133669510         CDS       T10372                                 
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    133669510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pnz03019]
    133669510
   03016 Transfer RNA biogenesis [BR:pnz03016]
    133669510
Enzymes [BR:pnz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     133669510
Messenger RNA biogenesis [BR:pnz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     133669510
Transfer RNA biogenesis [BR:pnz03016]
 Prokaryotic type
  tRNA degradation factors
   133669510
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 OB_RRP5_4th S1_RRP5 DUF6293_C
Other DBs
NCBI-GeneID: 133669510
NCBI-ProteinID: XP_061945664
LinkDB
Position
12:complement(5143460..5165362)
AA seq 925 aa
MLANPSTSTTLHYRPNSTHNPPFSHTNHRCKLSLSPNCPRFTNFAKSKCSSLSLLLSRRK
RERLVTVVKAFEDTSAVNDGPQSLPQPISVKIPVGDRHIMVETGHLGRQASGSVTVTDGE
TIIYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGRLKDHEVLICRLIDR
PLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLV
DNKFIVNPTTKEMEESKLDLLLAGTDSAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICN
EVNALVKKCGKPKMLDAIKLPPPELYKHMEEIAGDELIKVLQIRNKVPRRKALQSLEEKV
LSILTEKGYVSKDQSFGIPETVADLLEVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLF
SEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGET
QSLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLA
ERALEPILPSENDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMG
MVLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMKT
ALLQARDGRKHILAEMLKCSPSPSKRLSKYAPLIHVMKVNPEKVNIIIGSGGKKVKSIIE
ETGVEAIDTQDDGIVKITAKDLSSIEKSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFV
EIAPGHEGLCHISELSSNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEATSE
KSSAEQQARDLTEGNTEQSKDKSRATKFVNLTKVDSVEDAPLSKKKAYKRLTSSARDGPK
NSSTTVSSIASKDENSLVNGEAKIG
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgctagcaaaccctagcaccagtactactctccattacaggccgaattccacacacaac
cctccattttcccacactaatcatcgctgcaagctctctctctcccctaattgccctcgc
ttcaccaattttgcaaaatccaagtgttcttcactttctctgcttctatcaagaagaaaa
cgtgaaaggttggttactgtagtcaaagctttcgaggacacttctgctgtaaatgacggc
cctcagtctttgcctcagcctatttctgtcaaaatccccgtcggtgacagacatataatg
gttgagacgggccatcttgggagacaagctagtggttctgtcacagtcacagatggagaa
actattatctatacatctgtttgtctggatgatgttcctagtgagccttctgatttctat
cctctttctgtaaactatcaagagcgattttctgcagcaggtcgaactagtggaggattt
ttcaaacgagaagggaggttgaaagatcatgaggttcttatttgtagattgatagatagg
cctttgcgcccaactatgctcaagggattttaccatgaaactcagatactatcttgggtt
ttaagctatgatggcttgcattctccagattctttggctgtcacagcagctgggatagca
ttagctctttcggaagtgccaaatacaaaagtgattgcaggagttcgagttggccttgtt
gacaacaaatttattgtgaatccaacaaccaaggagatggaagagtcaaaattagattta
ttgctggctggaacagacagtgcaatattcatgatagagggttattgcaattttcttccg
gaagaaaaattgcttgaagcagtacaaattggacaggatgcagtgaggacaatttgcaat
gaggtgaatgctttggtgaagaagtgtgggaaacctaaaatgcttgatgcaatcaaatta
cctcctcctgagctatataagcatatggaggaaatcgctggtgatgagttaataaaagtg
ttgcaaattaggaataaagtaccaagaagaaaggcccttcaatcactggaagaaaaagtg
cttagtatacttacagaaaagggatatgtaagcaaggatcaaagttttggaatccctgaa
acagttgcagacttgctagaggttgaagaggaggatgaggaagttgttgtagatggtgaa
gtagatgaaggtgatgtccacataaagccaaatggacgcagatcctctccttcgctgttt
tctgaggtggatgtgaagctggtatttaaagaagttacatccaaattcttgcggagacgt
attgtggagggaggaaaaagaagtgatgggagaaccccagaagggatacgtccaattgat
tccagctgtggattactccctagagcacatggaagtgctcttttcacccgtggagaaaca
cagtcattggcggttgttacacttggtgataaacaaatggcacaaagagtagacaacctt
gtggatgaagaggaattcaagaggttctatctacagtactcatttcctccatcatgtgtt
ggagaagtaggccgcataggagcacctagtagaagagaaatcggtcatggaatgcttgct
gagagggctcttgaacctatattgccttctgaaaatgattttccttatactgtacgagtt
gagagtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgc
ttggcactacaagatgctggtgttcctgtgaaatgtatgattgctggcatagcaatgggt
atggttctcgacactgaggaatttgggggcgatggaacaccactcattctgtctgacata
accggatcagaagatgcttctggagatatggatttcaaggttgctggaaatgaagatgga
gtaactgcatttcagatggacataaaggttgggggaattactttacctgtcatgaagacg
gcattgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctca
ccttccccttctaaaaggctttctaagtatgccccattgattcatgttatgaaggtcaat
ccagagaaagttaacattatcattggttctggtgggaagaaggtgaagagtatcatagaa
gaaactggagtagaggctattgacacacaggatgatggaattgtaaaaattactgcaaag
gatttgtcaagtatagagaagtccatatccattattagtcaactaactatggttccagct
gttggtgatatctacaagaactgcgagatcaaatcagtagctccttacggagtttttgtt
gagatagccccggggcatgagggactctgccacattagtgaactgagttctaactggttg
ccgaaggcagaagatgctttcaaagttggagatcgtgttgatgttaaactcattgaggta
aatggaaagggacaacttcgccttagtcgcaaagcattacttcctgaagcaacttcagag
aagtccagtgcagagcagcaggcaagggatttaactgaagggaatactgaacagtcaaag
gataaaagccgtgctacaaaatttgtaaatctcaccaaagttgattcagtagaggatgct
ccactttcaaaaaagaaggcttacaagagattaaccagttctgccagagatggaccgaag
aacagtagtacaactgtcagtagcatcgcaagcaaagatgaaaatagtttagtgaatgga
gaagctaagattggatag

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