Populus nigra (Lombardy poplar): 133669510
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Entry
133669510 CDS
T10372
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133669510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133669510
03016 Transfer RNA biogenesis [BR:
pnz03016
]
133669510
Enzymes [BR:
pnz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
133669510
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
133669510
Transfer RNA biogenesis [BR:
pnz03016
]
Prokaryotic type
tRNA degradation factors
133669510
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
DUF6293_C
Motif
Other DBs
NCBI-GeneID:
133669510
NCBI-ProteinID:
XP_061945664
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All DBs
Position
12:complement(5143460..5165362)
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AA seq
925 aa
AA seq
DB search
MLANPSTSTTLHYRPNSTHNPPFSHTNHRCKLSLSPNCPRFTNFAKSKCSSLSLLLSRRK
RERLVTVVKAFEDTSAVNDGPQSLPQPISVKIPVGDRHIMVETGHLGRQASGSVTVTDGE
TIIYTSVCLDDVPSEPSDFYPLSVNYQERFSAAGRTSGGFFKREGRLKDHEVLICRLIDR
PLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIALALSEVPNTKVIAGVRVGLV
DNKFIVNPTTKEMEESKLDLLLAGTDSAIFMIEGYCNFLPEEKLLEAVQIGQDAVRTICN
EVNALVKKCGKPKMLDAIKLPPPELYKHMEEIAGDELIKVLQIRNKVPRRKALQSLEEKV
LSILTEKGYVSKDQSFGIPETVADLLEVEEEDEEVVVDGEVDEGDVHIKPNGRRSSPSLF
SEVDVKLVFKEVTSKFLRRRIVEGGKRSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGET
QSLAVVTLGDKQMAQRVDNLVDEEEFKRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLA
ERALEPILPSENDFPYTVRVESTITESNGSSSMASVCGGCLALQDAGVPVKCMIAGIAMG
MVLDTEEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGVTAFQMDIKVGGITLPVMKT
ALLQARDGRKHILAEMLKCSPSPSKRLSKYAPLIHVMKVNPEKVNIIIGSGGKKVKSIIE
ETGVEAIDTQDDGIVKITAKDLSSIEKSISIISQLTMVPAVGDIYKNCEIKSVAPYGVFV
EIAPGHEGLCHISELSSNWLPKAEDAFKVGDRVDVKLIEVNGKGQLRLSRKALLPEATSE
KSSAEQQARDLTEGNTEQSKDKSRATKFVNLTKVDSVEDAPLSKKKAYKRLTSSARDGPK
NSSTTVSSIASKDENSLVNGEAKIG
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgctagcaaaccctagcaccagtactactctccattacaggccgaattccacacacaac
cctccattttcccacactaatcatcgctgcaagctctctctctcccctaattgccctcgc
ttcaccaattttgcaaaatccaagtgttcttcactttctctgcttctatcaagaagaaaa
cgtgaaaggttggttactgtagtcaaagctttcgaggacacttctgctgtaaatgacggc
cctcagtctttgcctcagcctatttctgtcaaaatccccgtcggtgacagacatataatg
gttgagacgggccatcttgggagacaagctagtggttctgtcacagtcacagatggagaa
actattatctatacatctgtttgtctggatgatgttcctagtgagccttctgatttctat
cctctttctgtaaactatcaagagcgattttctgcagcaggtcgaactagtggaggattt
ttcaaacgagaagggaggttgaaagatcatgaggttcttatttgtagattgatagatagg
cctttgcgcccaactatgctcaagggattttaccatgaaactcagatactatcttgggtt
ttaagctatgatggcttgcattctccagattctttggctgtcacagcagctgggatagca
ttagctctttcggaagtgccaaatacaaaagtgattgcaggagttcgagttggccttgtt
gacaacaaatttattgtgaatccaacaaccaaggagatggaagagtcaaaattagattta
ttgctggctggaacagacagtgcaatattcatgatagagggttattgcaattttcttccg
gaagaaaaattgcttgaagcagtacaaattggacaggatgcagtgaggacaatttgcaat
gaggtgaatgctttggtgaagaagtgtgggaaacctaaaatgcttgatgcaatcaaatta
cctcctcctgagctatataagcatatggaggaaatcgctggtgatgagttaataaaagtg
ttgcaaattaggaataaagtaccaagaagaaaggcccttcaatcactggaagaaaaagtg
cttagtatacttacagaaaagggatatgtaagcaaggatcaaagttttggaatccctgaa
acagttgcagacttgctagaggttgaagaggaggatgaggaagttgttgtagatggtgaa
gtagatgaaggtgatgtccacataaagccaaatggacgcagatcctctccttcgctgttt
tctgaggtggatgtgaagctggtatttaaagaagttacatccaaattcttgcggagacgt
attgtggagggaggaaaaagaagtgatgggagaaccccagaagggatacgtccaattgat
tccagctgtggattactccctagagcacatggaagtgctcttttcacccgtggagaaaca
cagtcattggcggttgttacacttggtgataaacaaatggcacaaagagtagacaacctt
gtggatgaagaggaattcaagaggttctatctacagtactcatttcctccatcatgtgtt
ggagaagtaggccgcataggagcacctagtagaagagaaatcggtcatggaatgcttgct
gagagggctcttgaacctatattgccttctgaaaatgattttccttatactgtacgagtt
gagagtacaatcacagaaagcaatggctcctcaagcatggcctctgtttgtggaggctgc
ttggcactacaagatgctggtgttcctgtgaaatgtatgattgctggcatagcaatgggt
atggttctcgacactgaggaatttgggggcgatggaacaccactcattctgtctgacata
accggatcagaagatgcttctggagatatggatttcaaggttgctggaaatgaagatgga
gtaactgcatttcagatggacataaaggttgggggaattactttacctgtcatgaagacg
gcattgctacaagcaagggatggccgaaagcatattcttgctgaaatgttgaaatgctca
ccttccccttctaaaaggctttctaagtatgccccattgattcatgttatgaaggtcaat
ccagagaaagttaacattatcattggttctggtgggaagaaggtgaagagtatcatagaa
gaaactggagtagaggctattgacacacaggatgatggaattgtaaaaattactgcaaag
gatttgtcaagtatagagaagtccatatccattattagtcaactaactatggttccagct
gttggtgatatctacaagaactgcgagatcaaatcagtagctccttacggagtttttgtt
gagatagccccggggcatgagggactctgccacattagtgaactgagttctaactggttg
ccgaaggcagaagatgctttcaaagttggagatcgtgttgatgttaaactcattgaggta
aatggaaagggacaacttcgccttagtcgcaaagcattacttcctgaagcaacttcagag
aagtccagtgcagagcagcaggcaagggatttaactgaagggaatactgaacagtcaaag
gataaaagccgtgctacaaaatttgtaaatctcaccaaagttgattcagtagaggatgct
ccactttcaaaaaagaaggcttacaagagattaaccagttctgccagagatggaccgaag
aacagtagtacaactgtcagtagcatcgcaagcaaagatgaaaatagtttagtgaatgga
gaagctaagattggatag
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