Populus nigra (Lombardy poplar): 133670024
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Entry
133670024 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133670024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133670024
03009 Ribosome biogenesis [BR:
pnz03009
]
133670024
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133670024
Spliceosome [BR:
pnz03041
]
Complex A
U1 snRNP components
U1 related factors
133670024
Complex B
133670024
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133670024
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
133670024
NCBI-ProteinID:
XP_061946403
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All DBs
Position
12:15783177..15789743
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AA seq
559 aa
AA seq
DB search
MSYIPPHLRNSSSNATITASRAHSVPPTDTNDHPNLSHSSSNFNTSSSTTFASPSRRSSG
AFPRTISVPQPVFPNWTPSDRVLRFNPDQIAEIRSRLNIDVSVASGSPLAPAAIESFEDM
CLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQ
PPVRRGDGPLALVLAPTRELAQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLELRAGV
DVIVATPGRLIDHIQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLF
SATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLALLVEDASQ
AERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHGGRSQSEREAALRDFRSGSTS
ILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDQDLFLV
AQIKKAIADVESGNTVAFATGKTARRKEREAAAALQKEARNDPSKVMGPACINIEDKYRF
MIAPSIIKSEGAADSAWDD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatattcctcctcacctgagaaactcaagctcaaacgccaccattactgcttct
agagctcactcagttcctccaactgacactaacgatcacccaaacctctcccattcctct
tcgaatttcaacacctcctcctccaccacattcgcctctccctcgcgtcggagctccggc
gccttcccccgaactatctccgttcctcaacctgtttttcctaactggacgccctccgac
cgcgtccttcgcttcaatcccgatcagattgcagaaattcggtctcggcttaatatagat
gttagtgttgcttcgggttcacctcttgcacctgcagctattgaatcatttgaagatatg
tgtttacatcaaagtatcatgaaggatattgcacatcatgagtatacgaggccgacttca
atccaggctcaggcaatgactgtcgcacttagtggaagggatttgctgggttgtgctgaa
actggtagtggcaaaactgccgcatttaccattcctatgatacagcattgcttggctcaa
cctcctgttcggcgtggtgatggaccattggcattggtgctggctcctacaagagaactc
gctcagcagattgaaaaagaggttaaaggttttagtagatctcttgagtcctttagaacg
gcaatcgtggtgggaggaacaaatattgctgaccagaggttggagctacgagcaggggtg
gatgtaattgttgctactcctggaagattaatcgatcatatacaacaaggaaacacttcc
ctttcaagaatttcatttattgttctggatgaagctgatagaatgcttgacatggggttt
gaaccacagattagagaggttatgcgcaaccttccagaaaagcatcaaactttgctgttc
agtgcaactatgcctgtggaaattgaaacattaacacaggagtacttaactagccctgtg
caagttagggtaggaaaagtgagtagcccaactgcaaatgtgtctcaaattctgacaaag
gtttctgaaagcgagaagattgattgccttctagctctgctcgtggaggatgcttctcag
gctgaaagatcaaatcaacctttccccttgactattgtgtttgtggagaggaagacaagg
tgcaacgaagttgccgaagctttggtagcacaagctttacaggcagttgctcttcatggt
ggtcgtagtcagagtgaaagagaggctgctctgcgtgattttaggagtggctctactagt
attttggttgccactgatgttgcatctcgcggattggatgtaactggagttgctcatgtg
attaatctggatctcccaaagacaatggaagattatgtgcatcgaattggaaggactggc
cgtgcaggatcaactggccaagccacttcgttctacactgatcaagatctgttcctcgtg
gcacaaataaagaaagcaatagcagatgttgagtcggggaacacggtggcttttgcaaca
gggaagactgcgagaaggaaagagagagaggcagcggcagctttgcaaaaggaagccagg
aatgatccgtccaaggtgatggggcccgcgtgtataaacatcgaggataagtataggttc
atgatagctccttcaatcattaaaagtgagggtgcagctgacagtgcctgggatgattga
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