Populus nigra (Lombardy poplar): 133670073
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Entry
133670073 CDS
T10372
Name
(RefSeq) protein STABILIZED1
KO
K12855
pre-mRNA-processing factor 6
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133670073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133670073
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
133670073
Complex C
U5 SnRNP specific factors
133670073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
HAT_PRP39_N
TPR_19
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
TPR_16
TPR_2
TPR_17
TPR_8
TPR_CcmH_CycH
HAT_Syf1_M
FAT
TPR_1
ubiquitin
ARM_TT21_C
PAP_PilO
TBK1_ULD
PMC2NT
Motif
Other DBs
NCBI-GeneID:
133670073
NCBI-ProteinID:
XP_061946481
LinkDB
All DBs
Position
12:14371385..14376413
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AA seq
1024 aa
AA seq
DB search
MVFIRTPTSTNKTLYIHTNPTSTTLHALKHQIQLQTQIPISKQNLLLPKIFQNPNTLLLS
QLDITNNTTLTLHIPLLGGMQAPVAPKSRLDFLNSKPPANYVAGLGRGATGFTTRSDIGP
ARAAPDLPDRNAGAAAAGPGGGAGRGKGGKGGEDEDEDESEEKGYDENQKFDEFEGNDVG
LFASAEYDEDDREADAVWEEIDKRMDSRRKDRREARLKEEIEKYRASNPKITEQFADLKR
KLVTLSAEEWETIPDIGDYSLRNKKKRFESFVPVPDTLLEKARQEQEHVTALDPKSRAAG
GAETPWGQTPVTDLTAVGEGRGTVLSLKLDRLSDSVSGLTVVDPKGYLTDLKSMKITSDA
EISDIKKARLLLKSVTQTNPKHPPGWIAAARLEEVAGKIQAARLLIQKGCEECPTNEDVW
LEACRLSNPDEAKGVIAKGVKRIPNSVKLWMQAAKLENDDFTKRKVLLKGLEHIPDSVRL
WKAAVELCNEEDARTLLGRAVECCPLHVELWLAFARLETYENARKVLNRAREKLPKEPAI
WITAAKLEEANGNTPMVGKLIERGIRALQREGVVIDREEWMKEAEAAERAGSVATCQAII
KNTIGIGVEEEDRKRTWVADAEECKKRGSIETARAIYAHALTVFLTKKSIWLKAAQLEKS
HGTRESLDALLRKAVTYRPQAEVLWLMGAKEKWLAGDVPSARAILQEAYAAIPNSEEIWL
AAFKLEFENHEPERARMLLAKARERGGTERVWMKSAIVERELGNIEEERKLLDEGLQRFP
SFFKLWLMLGQLEERLGNLDKAKEIYEAGLKSCPSHVPLWLSLANLEEKTNGLSKARAVL
TMARKKNPKNPELWLAAIRAESRHGNNKEADNLMAKALQECPTSGILWAASIEMAPRAQH
KSKSADAIKKCSPHDPHVTTAVAKLFWRERKVDKARSWLNRAVTLAPDIGDFWAYYYKFE
LQHGTEEDQKDVLKRCIAAEPKHGEKWQTISKAVENSHQPTEAILKKVVVVLGKEESASE
NNDH
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggttttcataagaaccccaacaagcaccaacaaaaccctatacattcacacaaaccct
accagcacaacccttcatgccctcaaacaccaaattcaactccaaacccaaatcccaatc
tctaaacaaaaccttcttcttccgaagattttccaaaatccaaacactcttttgctttct
cagcttgacattaccaataacacaaccctaacccttcacatccctttacttggggggatg
caagctccggtcgcaccgaaatcccgactggattttttaaattcgaagcctccagctaat
tatgttgcggggttagggcgtggtgctactggttttactactcgttctgatattggtccg
gcacgggctgcaccggatttgcctgataggaatgccggggcggcagctgcggggccaggg
ggtggtgcggggcgggggaaaggggggaaaggaggggaagacgaggatgaggacgagagt
gaggaaaaaggttatgatgagaatcagaagtttgatgagtttgaaggaaatgatgtgggg
ttgtttgcttctgcggagtatgatgaggacgatagggaggcagatgcagtgtgggaggag
attgataagaggatggattcgaggaggaaggatagaagggaagctaggttaaaggaggaa
attgaaaagtatagggcttcgaatccgaagattactgagcagtttgctgatttgaagagg
aagttagtaacattgtctgccgaagagtgggagactattccagatatcggggattattca
ttgaggaataagaagaagaggtttgagagttttgtgccggttccggatactttgttggag
aaagctagacaggagcaggaacatgttactgcattggatcctaaaagtagggcggctggc
ggagctgagacgccatgggggcagacgccagtcacagatttgactgctgttggagaagga
agagggactgttttgtcattgaagttggataggttgtcagattcggtttctgggttgact
gttgttgatcctaaagggtatttgactgatttgaagagtatgaagattactagtgatgca
gagatttcggatattaagaaggctaggttgttgttgaagagtgttacacagacgaatcca
aaacatccccctggttggattgctgcggcaaggttagaagaggtggcagggaagattcag
gcggctaggctgttgatacaaaaagggtgcgaggaatgtcctacgaatgaggatgtctgg
ttggaggcttgcaggttgtcgaatcctgatgaagcgaagggggttattgcaaagggagtt
aagaggattcccaattccgtcaagttgtggatgcaggctgcgaaattggagaatgatgat
tttactaagcggaaggttttgttgaagggtttagagcatatcccggattctgtgaggctg
tggaaagcagcggtggagttgtgtaatgaggaggatgctaggactttacttggtagggca
gtggaatgctgtcctttgcatgttgagttgtggttagcatttgcaaggttggagacgtat
gaaaatgcgaggaaggtgttgaatagggcgagagaaaagttgcccaaggagccagctata
tggattactgctgccaagttggaggaggcaaatgggaatacaccaatggttgggaagctt
attgagagaggtattagggctttgcagagagaaggggtggtgattgatagggaggaatgg
atgaaggaggctgaggcagcagagagggctggttctgtggcaacttgtcaagcgattatt
aagaacacaattggaattggagtcgaagaagaggatagaaagcgaacatgggtggcggat
gcagaggagtgtaagaagagagggtctattgagactgctagagcaatttatgcgcatgca
ttgacggtgtttttgactaagaagagtatttggcttaaggcagcgcagcttgagaagagt
catggcacaagagaatccctcgatgcattgctacggaaggcagttacttacaggccacag
gctgaagttctatggcttatgggcgctaaagagaagtggcttgctggagatgtaccttct
gcccgagccattcttcaagaagcttatgctgctataccgaactccgaggagatttggctt
gcagcatttaagcttgaatttgagaatcatgagccagaaagagctagaatgttgcttgct
aaagcaagagaaagaggtggtacagaaagagtctggatgaagtctgcaattgtagaaaga
gaattaggcaatatcgaggaggagaggaaactgctggatgaagggttgcagcgtttccct
tcattcttcaaactgtggttgatgcttgggcagctcgaggaacgtcttggtaatttggat
aaagccaaggaaatttatgaggcgggtttgaagtcctgcccaagtcatgtgcctctttgg
ctttctcttgctaacctcgaggagaaaacaaatgggctcagtaaagctcgagcagtgctt
accatggcaaggaagaagaatcctaagaaccctgaactttggctggctgcaatccgtgct
gaatcaaggcatgggaataataaggaagctgataacttgatggcaaaagcattgcaggaa
tgtcccaccagtggcatactttgggcagcatctattgagatggctcctcgtgctcaacat
aaaagcaagagcgcggatgcaattaagaaatgtagtcctcatgatccacatgttacaact
gctgtggccaagttgttctggcgggaaaggaaggttgacaaagctaggagttggctgaac
agggcagttacccttgccccagatattggagatttctgggcgtattactacaaatttgaa
cttcagcatgggactgaggaagaccagaaggatgtcttgaagaggtgcattgctgcagaa
ccaaagcatggtgaaaaatggcaaacgatttcaaaggctgtggagaactctcaccagcct
actgaagcaatcttgaagaaagtggtggttgttcttgggaaggaagagagtgcttccgaa
aataatgaccattag
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