Populus nigra (Lombardy poplar): 133670082
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Entry
133670082 CDS
T10372
Name
(RefSeq) uncharacterized protein LOC133670082 isoform X1
KO
K03267
peptide chain release factor subunit 3
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133670082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670082
03012 Translation factors [BR:
pnz03012
]
133670082
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133670082
Translation factors [BR:
pnz03012
]
Eukaryotic type
Release factors
133670082
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
TrcR
G-alpha
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
133670082
NCBI-ProteinID:
XP_061946499
LinkDB
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Position
12:10309135..10321552
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AA seq
522 aa
AA seq
DB search
MAEVPSLDIAEEIRSLQLDSAASEVNGVINPEDAKPEEVEEVDKMEEDSNDNVTISTQEM
QVETSKVKDKQVPVSEDVGAPVEMEEDNKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVD
DRTIQKYEKEAKEKSRESWYMAYIMDTNEEERVKGKTVEVGRAYFETETSRFTILDAPGH
KSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKM
DDPTVNWSKERYDEIESKMVPFLKLSGYNVKKDVQFLPISGLLGTNMKTRMGKAICPWWN
GPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVTEGDSLLVMPNKTM
VKVLAVYCDENKVRCAGPGENVRVRLSGIDDEDILSGFVLSSVVRPITAVTEFDAQLQIL
ELVDNAIFTAGYKAVLHIHAVVEECEIVQLLQQIDPKTRKPMKKKVLFVKNGAIVVCRVQ
VNNLICIEKFSDFAQLGRFTLRTEGKTVAVGKVMELPLGYNS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagtgccttcacttgatattgcggaggagattcgttcgttacagcttgactca
gcagcatcagaggtaaatggggtgattaatccagaagatgcaaagccagaagaagttgag
gaggtggataaaatggaggaagattcaaatgataatgtcaccataagcactcaggaaatg
caggttgagacatccaaagtgaaagataagcaagtacctgtatcagaagatgtgggagct
ccggttgagatggaagaagacaataagaagcgacacttaaatgttgtttttatcggtcat
gttgatgctggtaagtcaaccactgggggccagatactctttcttagtggacaggtggat
gatcgcacaatccagaaatatgagaaagaagccaaggaaaaaagtagagaaagttggtat
atggcttatattatggacaccaatgaggaggagagggttaagggcaaaacagttgaagtt
ggaagagcgtactttgaaacagagacatcaagatttacaattttagatgcaccgggccac
aagagttatgttccaaatatgattagtggagcatctcaggctgatattggtgtgctagtt
atttctgctcggaaaggagaatttgaaactggctatgagagaggagggcagacccgtgag
catgttcaacttgcaaagaccttgggtgtgtctaagctgcttgttgttgtgaataaaatg
gatgatccaactgtgaactggtcaaaagaaaggtatgatgagatcgaatcaaagatggta
cctttcctcaagctttctggctacaatgtgaagaaagatgtccaattcctaccaatatct
ggtctgcttggcaccaacatgaaaacaagaatgggtaaggctatatgtccatggtggaat
ggcccatgcctttttgaggcccttgatgctattgaagttcctccacgagatccaaagggt
ccttttaggatgcctattattgacaaatttaaggacatgggaactgttgtcatgggcaaa
gtagagtctggtagtgtgacagagggtgattccttgttggtcatgccaaacaagactatg
gtgaaagttcttgctgtatattgcgatgaaaacaaggtaagatgtgcaggaccaggagaa
aatgtacgggttagattatctggaattgatgatgaggatatattgtctggttttgtgctt
tcaagtgttgtaaggccaatcactgcagttacagagtttgatgcacagttgcaaatcctt
gaactagtggataatgcaatttttacagctggctacaaggctgtcttgcacatacatgct
gttgttgaggagtgtgagattgttcagctgctgcagcaaattgatccaaagacaaggaaa
cctatgaaaaagaaagtcctctttgtgaagaatggtgccatagttgtctgccgtgttcag
gtaaacaacttgatatgcattgagaagttttcagattttgcacaactcggcaggtttact
cttcgtactgaggggaaaacagttgcagtgggaaaagtcatggaacttcctttgggttat
aattcttaa
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