Populus nigra (Lombardy poplar): 133670119
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Entry
133670119 CDS
T10372
Name
(RefSeq) protein TORMOZ EMBRYO DEFECTIVE-like
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
133670119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pnz03009
]
133670119
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
133670119
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Utp13
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_SPT8
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_ACSF4
Beta-prop_LRRK2
Cytochrom_D1
Beta-prop_NOL10_N
PROPPIN
WD40_like
Motif
Other DBs
NCBI-GeneID:
133670119
NCBI-ProteinID:
XP_061946569
LinkDB
All DBs
Position
12:7083357..7092805
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AA seq
868 aa
AA seq
DB search
MSSLQIKKNYRCVPSLQQFYSGGPFAVSSDGSFIACANGDAIKILDSSNASIKASIEVDT
DSGLTALALDPNDRFLFSAGHSRLIRVWDLSTFKCIRSWKGHDGPVMSMACHASGGLLAT
AGADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKK
CIATLERHFSALTSMAVSEDGWTLLTAGRDKVVNLWDLHDYVCKMTIPTYEVLEGLCVVK
SGTELASFLGSCNQQSGKRRDRSSPIYFVTVGERGIVRIWDSECGVSLYEQKSSDVAVSS
DTDDSLRGFTAAVILPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILD
MRFLGEEEKFLAVATNLEQVQVYDMESMSCSYVLAGHTEIVLCLDTCVSSSGRPLLATGS
KDNSVRLWNSESRNCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDA
DQPINLKAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRG
IWSVEFSPVDQCVITASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGA
DGLVKLWTVKTNECTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEA
FRKEEEGVLRGQELENAVLDADYIKAIQIAFELHRPNKLFELFAELCRKKEGSSQIEKAL
HVLGKEEIHQLFQYVREWNTKPKLCHVAQYVLFGVFNILPPTEILEIKGIGELLEGLIPY
SQRHLSRIDRLLRSTFLLDYTLHGMSVIEPDTNATEMKDADQEQELTSELLKEKAPSKKR
KSNKSKDSSSKKVKGAAYTSVSPISLEA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcattacaaataaagaaaaactacaggtgcgtcccgtctctgcagcaattctac
agcggaggcccttttgctgtctcttctgatggttccttcattgcttgcgcgaacggggac
gctatcaagattttggattcttccaacgcatcaataaaagccagcatagaggttgataca
gattctggtctaaccgccttagctcttgaccccaatgatagatttcttttttctgccggg
cacagcaggcttataagggtctgggacttgtccactttcaaatgcatccgctcttggaag
ggccatgatggtcctgtgatgtcaatggcttgccatgcttctggagggttgcttgcaact
gcaggagctgataggaaagtacttgtatgggatgttgatggtggcttctgtactcattac
tttaaggggcataaagacgttgtgactagcattatgttccatcctgataccaataaaact
ctgcttttctcaggaagtgctgatgctactgtacgagtttgggatcttctagcaaagaag
tgtatcgcaacattagaaaggcatttctcagcacttacgtctatggcagtgtctgaagat
ggatggacattgctaactgctggaagagataaggttgtaaacttgtgggaccttcatgac
tatgtatgcaagatgactattccaacttatgaagtgctggaaggtttgtgtgtagttaaa
tcagggactgagttagcttcatttctgggttcatgcaatcagcaaagtgggaagaggaga
gacaggtcatcaccaatttattttgtcacagttggtgaacgtgggattgtacgaatatgg
gattctgaatgtggggttagcttgtatgaacagaagtcctcagatgttgctgtctcctct
gacacagatgattctctgagaggcttcactgctgctgttatccttccattagatcaaggg
ttactttgtgtgaccgttgatcatcactttctgttctactctctacttggacaccctgaa
gagaaattcaagttaattctgaacaagaggcttgttgggtataatgaagagattcttgac
atgaggtttctgggagaggaggaaaagtttcttgctgttgctacaaatcttgaacaggtt
caagtgtatgacatggaatctatgtcatgctcctatgtattggcaggtcatactgaaatt
gttttatgccttgacacctgtgtatcaagctctggaaggccacttcttgcaacaggaagt
aaggacaacagtgtaaggttgtggaattcagagagcagaaattgcattggtgttggcaca
ggtcacatgggaggtgttggagctgttgcattttcaaagaagtggaagaatttctttgtt
agtggtagcagcgatcgtaccatcaaggtgtggagtttagatggtatctcagatgatgca
gaccagcctataaatttgaaagcaaaagctgtggtggcagcacatgacaaggatataaat
tcgctggctattgcaccaaatgatagtttggtttgtagcggttcacaagaccggactgct
tgtgtgtggaggctgccagatctggtatctgtagttgtacttaaagggcataaaagagga
atatggtcagtagagttttctccagttgatcaatgtgttataacagcatctggtgataaa
acaataaagatgtgggctatagctgatgggtcatgcttgaaaacatttgaagggcacaca
tcaagtgttttaagagcatcatttcttactcgtggaagtcaatttgtttcgtgcggtgct
gatggtttggtaaagctatggacagtcaaaacaaatgaatgcactgctacatatgatcaa
catgaggacaaggtttgggccttggcaattggaaaaaagacagaaatgtttgcaactggc
ggtggtgatgctgttgttaatctgtggtatgattcaactgcttcagataaagaggaagct
ttccgaaaagaagaggaaggggtattaagaggtcaagaattggaaaatgctgtgttagat
gctgactacattaaagctatccaaatagcatttgaacttcacaggcctaataaacttttt
gagttgtttgctgaactttgcaggaagaaggaaggtagcagtcagatagagaaagccctc
catgttcttggcaaggaagaaattcatcaactttttcaatatgttcgtgaatggaataca
aagccaaagttgtgtcatgttgcacaatatgtgttgtttggagttttcaacatccttcct
ccaacagagattcttgagataaaaggcatcggggaacttcttgaaggtcttatcccatat
tcccaaaggcatttaagcaggatagacagacttttgaggagcacatttttgctcgactac
accctacatggaatgtcagttattgaaccagatactaatgcaacagaaatgaaagatgct
gatcaagagcaagagctgacttcagaattgttgaaagagaaggctccctcaaagaaacgg
aaatcaaacaaatctaaagatagttcaagtaagaaagtcaagggtgctgcttacacaagc
gtttctccaatttccttggaggcatag
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