Populus nigra (Lombardy poplar): 133670167
Help
Entry
133670167 CDS
T10372
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133670167
09122 Translation
03013 Nucleocytoplasmic transport
133670167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670167
03041 Spliceosome [BR:
pnz03041
]
133670167
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
133670167
Spliceosome [BR:
pnz03041
]
Complex C
Other components
EJC/TREX
133670167
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133670167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
133670167
NCBI-ProteinID:
XP_061946651
LinkDB
All DBs
Position
12:7712564..7742025
Genome browser
AA seq
1886 aa
AA seq
DB search
MSTTLPPMECLHVTEEFLLELKSGNRSFRLPHPVPIHRFLYELSWTLVRGELPFQKCKAA
LDSVEFVDKMSAVGLGSNFADIITQMAQDLTMSGEYRSRLIKLAKWLVESALVPLRFFQE
RCEEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRGSE
DTAENTSAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDSNVFLELIPIFPKSHASQI
LGFKFQYYQRMELNSPVPFGLFKLTALLVKEEFIDLDSICAHLLPKDDEAFEHYNTFSSK
RLDAAYKIGKINLAATGKDLMDDEKQGDVTIDLFAALDMETEAVAERFSDLEKNQTLGLL
TGFLSVDDWYHAHILFERLSPLNPVAHTQICGGLFRLIEKTISSAYNIIRQPHVQNCGSP
AVAVIDAMDVTSSSGHVSLIDLPKEFFQMLVTVGPYLYRDTLLLQKVCRVLRGYYMSALE
LVDSGDGALNGESLIPRNRVLRLHLREGRSMVEEALGACLLPSLQLVPANPAAGQEIWEV
MSLLPYEVRYRLYGEWEKDDERNPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA
HANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDG
LNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELVQQMANVQY
TENLTEEQLDAMAGSETLRYQATSFGVTRNNKALFKSTNRLRDSLLPKDEPKLAIPLLLL
IAQHRSVVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCGAVTPPSAYAQLIPSLDDLVH
LYHLDPEVAFLIYRPVMRLFKCEGSLEVFWPLDSNETVTTTSANLEPEAREYSGRVILDL
GSLHKPVMWSDLLETVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQQA
ALKALEELSDNSSSAITKRKKEKERIQESLDRLTSELHKHEENVSSVRRRLSREKDKWLT
SCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTL
QPMICCCTEYEAGRLGRFLYETLKIAYYWKSDETIYERECGNMPGFAVYYRFPNSQRVTY
GQFIKVHWKWSQRMSRLLIQCLESSEYMEIRNALILLTKISGVFPVTKRSGINLEKRVTR
IKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLDIKPPSVASKSLSGNVAAAQNS
SALNVSQGEPADGRALVTGSQHGDPGNSNRDLISRAKHADGRSDRTENISHLKSDLGHQK
SKGGSSTNGSNAQSAVSSAAVPIGASRSAENQKGMDDSTNRTLEDSTVRVAAKNLAESEL
KVSTKRPVSKTPKQDVVKDDNKSGKGAGRTLSSSTSDKDIQVHLSEGRQGGASNVSSALT
LNGNALSVSEKVSTMFTRTSDSYGVESKPDSGGNKPMLKDEATEVADVQKPPSRLVHSPR
HDNSVAASKSSDKLQKRASPAEEPDRLSKRQKGDVELGDLEGEVKFSERERSTDTRSADL
DKVGNDEQNLYRSVDKPLDRSKDKGNDRYDRDHRERSERPDKSRGDDSLADRSRDKSMER
YGRELSVERGQDRVADRSFDRLADKAKDDRSKLRYNDTSAEKSQVDDRFHGQNLPPPPPL
PPHMVPQSVTSGRREEDADRRFGTTRHVQRLSPRHDEKERRRSEENSLVSQDDAKRRKED
DVRERKREEREGLSIKVEEREREREREREREKTNLPKEEMDSSATAKRRKLKRDHLPTGE
ASEYSPVGPPPPPLGIGMSHSYDGRERGDRKGAMNQRASYLEEPLMRIHGKDVVGKMGRR
DTDPMYDREWDEDKRQRAEQKRRHRK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaactctccctcccatggagtgtttacatgtaactgaagaatttctcctcgaa
ttaaagagcggaaaccgtagcttccgtctccctcaccctgtacctattcatcgatttctc
tacgagctatcatggaccttggttcgaggagaattgccgtttcagaagtgcaaagctgct
ttggattctgtggagtttgttgataaaatgtctgctgtagggttgggttcgaatttcgct
gatatcattactcaaatggctcaagatcttacaatgtctggagagtaccgatctcgtctc
ataaagctggcaaaatggctagttgaatctgcgttggtcccattgaggtttttccaagag
cgttgtgaggaggaatttttatgggaagctgaaatgataaagataaaggctcaagacttg
aagggcaaagaggtcagggtaaatactcgtcttctttatcaacaaacaaaatttaacctt
ctccgtgaagagagtgagggctatgccaaactggttactcttctctgtcgaggttctgaa
gatacagctgaaaatacatcagcagcgacaataggcatcattaagtcattgatcggtcat
tttgatctggacccaaatcgtgttttcgacattgttttagagtgttttgaacttcagcct
gatagcaatgtctttttggaactgattcccatatttcctaagtcgcatgcatcacaaatt
cttggttttaagtttcagtattatcagcgaatggaattaaatagccctgtgccatttggg
ctctttaagcttacagccttactagtgaaggaagagttcattgatcttgatagtatatgt
gcacatttactccctaaggatgatgaggcttttgagcattataacacgttttcttccaaa
cgattggatgcggcctacaaaattggaaaaataaatctggctgctactggaaaggacctc
atggatgatgagaagcaaggagatgtgacaatagatctttttgctgccttagacatggaa
actgaggcagtagctgaacgattctctgatcttgaaaaaaatcaaactttgggcttgctg
actggtttcctttctgtggatgactggtatcatgcccatatacttttcgaacgtctctct
cctctaaatcctgttgcacatactcaaatatgtggtggcttgtttaggctcattgaaaag
acgatctcatcagcatataatattattcgtcaaccacatgttcaaaattgtgggtctcca
gcagttgctgttattgatgccatggatgtgacaagttcttcaggccatgtctctttaatt
gatcttcccaaagaattttttcagatgcttgtaacagttggaccttatctttaccgtgat
acgttattgctgcagaaggtttgtagagtgttaagaggttactatatgtctgcacttgag
cttgtagatagtggtgatggagctctaaatggtgaatctcttattcctagaaatcgagtt
cttcgtttgcacctaagggaaggtaggtcaatggttgaggaagccctgggagcatgttta
cttccttctttacagctggtacctgcaaatccagcagctgggcaggagatctgggaagta
atgagtctccttccatatgaggtgcgatatcgtttatatggtgaatgggaaaaagatgat
gagcggaatccaatggttttggctgcaaggcaaacagccaagttggatactagaaggata
ttgaaaaggcttgcaaaggaaaatttgaagcagctgggtaggatggttgcaaaattagcg
catgctaacccgatgactgtccttcgaactattgttcatcagattgaggcatacagggat
atgatcactcctgttgtggatgctttcaagtatttgacacagcttgagtatgatatcttg
gaatatgttgtaattgagcggttagcacaaggtggtcgtgataagctgaaggatgatggc
cttaatttgtcagactggcttcaatcactggcttcattctggggtcacctgtgtaagaag
tacccatctatggaattgagaggccttttccagtatttagtgaaccagttgaaaaagggc
caggggattgagcttgttcttctgcaggagcttgttcaacaaatggcaaatgttcaatac
acagaaaacttaacagaggaacagttggatgccatggcagggagtgagacacttcggtat
caagctacttcttttggagtaacaaggaataacaaggcgttgttcaaatctactaacagg
cttcgagactccttgcttcctaaggatgaaccaaagctagcgatcccccttttgttactt
attgctcaacatcgatctgtggttgtcataaatgcagatgctccttacattaaaatggtc
agtgagcagtttgataggtgtcatggaactcttcttcaatatgtggaattcctctgtggt
gctgtgacaccaccctctgcatatgctcagttaattccctctcttgatgatcttgtccac
ctgtatcatcttgatcctgaggttgcatttttaatataccgcccagtcatgagactcttc
aagtgtgagggtagtttagaggttttctggcccttagacagcaatgaaacagtaactact
acaagtgcaaacctggagcctgaagctagagaatattctggcagagtgattctggatctt
ggctctctccataagcctgtaatgtggtcagatcttcttgagactgtgaaaaccatgttg
ccttcaaaagcctggaatagtctctcacctgatctctatgccactttctggggacttaca
ctttatgatctatatgtccctagaaaccgttacgagtctgaaattgccaagcagcaagct
gctcttaaagctctggaagagctttctgataattctagttcagcaattactaaaaggaag
aaggagaaggaaaggattcaagaatctctcgatcgtctgactagtgagctccataaacat
gaagaaaatgtttcttctgttcgtagacgactatctcgtgaaaaggacaaatggctgact
tcttgtcctgatactttgaaaattaacatggagttccttcagcgctgtatttttccccgt
tgtactttcagcatgccggatgctgtatattgtgccatgtttgtacatactcttcattca
cttggcacaccatttttcaacactgtaaaccacatcgatgttctgatatgtaaaacatta
caacctatgatatgctgctgtactgaatatgaagcaggtagacttgggaggtttttgtat
gaaacactcaagattgcttactactggaagagtgatgaaactatatatgaacgtgagtgt
ggaaatatgcctggatttgctgtgtattatagattcccaaacagccaacgggttacatat
ggtcagttcattaaggtacactggaaatggagtcagagaatgtctcggctattgattcag
tgtctggaatcatctgagtacatggaaattcgaaatgctcttattttgttgacaaaaatt
tccggtgtttttccagttacgaaaaggagtggtattaaccttgaaaaacgagtaactaga
atcaaaagtgatgaaagggaggatctcaaggttttggctacaggtgttgctgcagctttg
gctgctagaaagccttcatgggttacagatgaagaatttggcatgggatatcttgacata
aagcctccatccgttgcatcaaagtctttatcgggaaatgtagcagcagcacaaaacagt
tctgcccttaatgtttctcaaggtgaacctgctgatggaagagcacttgtaactggaagc
caacatggagatcctgggaattcaaacagagatctgatatccagagcaaaacatgctgat
gggaggtcagatagaacagaaaatatctcacatttgaaatctgatctaggacatcagaaa
tcaaagggtggttcatcaaccaatgggtcaaatgctcagtcagctgtttcctcagctgct
gttcctataggtgcatcaagatcagcagaaaatcagaaggggatggatgactccacaaat
agaacattggaggatagcactgtcagagtagctgcaaagaacttggcagagtctgagttg
aaagtttccacaaagcggccagtgtctaaaacaccaaagcaagatgttgtgaaagatgac
aataaatctggaaaaggcgctggccgaactctatcctcatccacaagtgacaaagacatc
caggttcatttatcagagggaagacaagggggtgcttctaatgtttcttctgcgctcact
ttgaatggtaatgctctttcagtgtctgaaaaagtctctactatgtttacaagaacttct
gattcttatggtgtagaatcaaagccagatagtggaggtaacaaacctatgctaaaagat
gaagcaactgaagttgctgatgtgcagaagccaccttctcgacttgttcattctcctagg
catgataactctgttgctgcttcaaagtctagtgataaattgcaaaagagagcaagtcct
gctgaagaacctgacagattaagtaaacggcaaaaaggggatgtcgaattgggagattta
gagggtgaagttaaattctctgaaagagagaggtccaccgatactcgatctgcggatctt
gataaagtgggaaatgatgaacagaatctatataggagcgtagataaacctttggatagg
tcaaaagataaaggtaatgatagatatgacagggaccatagggaaagatcagagcgtcct
gataaatcccgtggagatgatagtttagctgacagatcgagagataaatcaatggaaaga
tatggaagagagctttcagttgagagagggcaggatagggttgctgataggagttttgac
agactagctgacaaagccaaagatgacagaagcaaattacgttacaatgatacctctgca
gaaaaatctcaggttgatgatcgttttcatgggcaaaacttgcctccgccaccaccttta
cctcctcatatggttccccaatcagttacttctggtagaagagaagaagatgcagacaga
aggtttggaactaccagacatgttcagaggctttctcctaggcatgatgagaaagaacga
agacgatcagaagaaaattccttggtttcacaggatgatgcaaaacgtagaaaagaggat
gatgttcgtgagagaaagcgagaagagcgagaggggctgtcaatcaaggtggaagagagg
gaaagagagagggagagggagagggagagagagaaaaccaaccttccaaaggaggaaatg
gactccagtgcaactgctaagagacgaaaacttaaaagagatcatctgccgacaggggaa
gctagtgaatattctcctgttggcccaccacctccaccccttggtattggcatgtcacat
tcatatgatggtagggagaggggagatcggaagggggccatgaatcagcgtgcaagttac
ttggaggaacctctcatgaggattcatggtaaagatgtagttggcaagatgggccgccgt
gatactgatccgatgtatgatcgggaatgggatgaggacaagaggcagagagctgaacaa
aagcggaggcatcggaagtaa
DBGET
integrated database retrieval system
