KEGG   Populus nigra (Lombardy poplar): 133670231
Entry
133670231         CDS       T10372                                 
Name
(RefSeq) pre-mRNA-splicing factor 38
  KO
K12849  pre-mRNA-splicing factor 38A
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133670231
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pnz03041]
    133670231
Spliceosome [BR:pnz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    133670231
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    133670231
SSDB
Motif
Pfam: PRP38 PRP38_assoc HIND
Other DBs
NCBI-GeneID: 133670231
NCBI-ProteinID: XP_061946731
LinkDB
Position
12:complement(829883..833483)
AA seq 377 aa
MANRTDPTAKNIRGTNPQNLVEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDVYRYL
EPLYNDYRKLRKKLTDGKFALTHMDEVIDELLTKDYSCDIAMPRIKKRWTLETLAALEPR
KSVLEDDFEEEEEREENEQLEGLDNGADERDYYHERSPARERERERERDRDRDRRRDSHR
HRDRDYDRDYDKDYDRERGRGRERDRDRDRDRYRLRDERDYGHDREREREREGRERERRD
RDRGRRRSHSRSRSRSRDRKRHAHSSSPKRRGDGAEEPKKKKKKEKKERKDDGTDHPDPE
IAEANKLRAALGLKPLK
NT seq 1134 nt   +upstreamnt  +downstreamnt
atggcgaatcgaacagatccaacagcgaagaacataagagggacaaacccacaaaaccta
gtagagaaaatcctgcggtccaaaatctatcaacacacgtactggaaagaacaatgtttt
gggttaactgcagagactttggtcgataaagcgatggaactcgatcacttaggtggtacc
tacggtggaaatcgtaagccgacgccgtttatgtgtttggtcatgaagatgttgcaaatt
caacctgagaaagatattgttgttgaattcattaaaaacgaagattacaaatatgtgcgt
gtgcttggtgctttttatctgcgacttactgggactgatattgatgtgtatcgttaccta
gagcctttgtataatgactatcgaaagttgaggaaaaaactaactgatgggaaattcgca
ttgacacacatggatgaagttatcgacgagctcttgacaaaagattattcttgtgacatt
gctatgccccgtattaagaaaagatggactcttgaaacacttgctgcacttgaacctaga
aagagtgtgttggaagatgattttgaagaagaggaagagcgagaagagaacgagcaactt
gagggattagacaatggtgctgatgaacgggactactaccatgagagaagtcctgcaagg
gaaagggaaagggaaagggaaagggatcgggatagggatagaagacgtgatagtcacaga
catagggatcgtgactatgatagagattatgacaaagactatgatagggagcgtggacgt
ggaagagagagagacagggacagagatagggatcgctatcgtttgagagatgaaagagat
tatggtcatgaccgggaacgagaaagagaaagggaaggcagggagcgtgaaagacgagat
agggaccgtggcaggcggaggagtcattcaaggagccgaagtaggagtcgggatcgtaaa
agacatgcccacagcagtagtcctaaaaggcgcggagatggagcagaagagccgaagaag
aagaagaagaaggaaaagaaggaaaggaaagatgatggtacggaccaccctgatccggag
attgctgaagctaataagctccgagcagcccttgggttgaaaccacttaaatga

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