Populus nigra (Lombardy poplar): 133670231
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Entry
133670231 CDS
T10372
Name
(RefSeq) pre-mRNA-splicing factor 38
KO
K12849
pre-mRNA-splicing factor 38A
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133670231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pnz03041
]
133670231
Spliceosome [BR:
pnz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
133670231
Complex C
U4/U6.U5 tri-SnRNP related factors
133670231
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
133670231
NCBI-ProteinID:
XP_061946731
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Position
12:complement(829883..833483)
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AA seq
377 aa
AA seq
DB search
MANRTDPTAKNIRGTNPQNLVEKILRSKIYQHTYWKEQCFGLTAETLVDKAMELDHLGGT
YGGNRKPTPFMCLVMKMLQIQPEKDIVVEFIKNEDYKYVRVLGAFYLRLTGTDIDVYRYL
EPLYNDYRKLRKKLTDGKFALTHMDEVIDELLTKDYSCDIAMPRIKKRWTLETLAALEPR
KSVLEDDFEEEEEREENEQLEGLDNGADERDYYHERSPARERERERERDRDRDRRRDSHR
HRDRDYDRDYDKDYDRERGRGRERDRDRDRDRYRLRDERDYGHDREREREREGRERERRD
RDRGRRRSHSRSRSRSRDRKRHAHSSSPKRRGDGAEEPKKKKKKEKKERKDDGTDHPDPE
IAEANKLRAALGLKPLK
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcgaacagatccaacagcgaagaacataagagggacaaacccacaaaaccta
gtagagaaaatcctgcggtccaaaatctatcaacacacgtactggaaagaacaatgtttt
gggttaactgcagagactttggtcgataaagcgatggaactcgatcacttaggtggtacc
tacggtggaaatcgtaagccgacgccgtttatgtgtttggtcatgaagatgttgcaaatt
caacctgagaaagatattgttgttgaattcattaaaaacgaagattacaaatatgtgcgt
gtgcttggtgctttttatctgcgacttactgggactgatattgatgtgtatcgttaccta
gagcctttgtataatgactatcgaaagttgaggaaaaaactaactgatgggaaattcgca
ttgacacacatggatgaagttatcgacgagctcttgacaaaagattattcttgtgacatt
gctatgccccgtattaagaaaagatggactcttgaaacacttgctgcacttgaacctaga
aagagtgtgttggaagatgattttgaagaagaggaagagcgagaagagaacgagcaactt
gagggattagacaatggtgctgatgaacgggactactaccatgagagaagtcctgcaagg
gaaagggaaagggaaagggaaagggatcgggatagggatagaagacgtgatagtcacaga
catagggatcgtgactatgatagagattatgacaaagactatgatagggagcgtggacgt
ggaagagagagagacagggacagagatagggatcgctatcgtttgagagatgaaagagat
tatggtcatgaccgggaacgagaaagagaaagggaaggcagggagcgtgaaagacgagat
agggaccgtggcaggcggaggagtcattcaaggagccgaagtaggagtcgggatcgtaaa
agacatgcccacagcagtagtcctaaaaggcgcggagatggagcagaagagccgaagaag
aagaagaagaaggaaaagaaggaaaggaaagatgatggtacggaccaccctgatccggag
attgctgaagctaataagctccgagcagcccttgggttgaaaccacttaaatga
DBGET
integrated database retrieval system