Populus nigra (Lombardy poplar): 133670232
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Entry
133670232 CDS
T10372
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133670232
04121 Ubiquitin system [BR:
pnz04121
]
133670232
Enzymes [BR:
pnz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133670232
Membrane trafficking [BR:
pnz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
133670232
Ubiquitin system [BR:
pnz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133670232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Zn_ribbon_19
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
Zf_IFT144_1st
zf-ANAPC11
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
133670232
NCBI-ProteinID:
XP_061946732
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All DBs
Position
12:complement(4736412..4738615)
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AA seq
344 aa
AA seq
DB search
MEDEMVDQYWCHMCSQMVNPVTEAEIKCPFCESGFLEEMGSVREVNNNIFDLGSEHAFSL
WDTFLLDLMGGLGTSGSRRIAQEHISSTSSQDEDDELDFESLLRRRGRLSTSSVQRLLQD
LHLRSENPENDRESSGGSSSSSSVILVNPFNEEAIILHSPDNMNQPENPSQNVSISFQDY
LIGPDVDLLLHHLAESGPNRYGTPPAEKEAVKAMPTISITQNLQCSVCLEEFDIGCEAKE
MPCKHKFHGECIVPWLELHSSCPVCRFLMPSDDSTTGVSQSRSDEERTESNDARIINNGR
RYWVPIPWPFDGLFPLSGSQNGGSSSSAPSSTTMRGSASYSDET
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgaaatggtggatcagtattggtgtcacatgtgttctcagatggtgaacccg
gtaacggaagctgagattaaatgcccattctgtgagagtggttttctggaagagatgggc
agcgtgagagaagtcaataataatatctttgatttaggatcagaacatgcattctctctt
tgggatacattcttgctggaccttatgggtggcttaggcacttctggttcacgtagaata
gctcaagaacatattagcagtaccagttcccaagatgaagatgatgagctagactttgag
tccttgcttcgaagaagaggtagactaagcacatcttcagtccaacgcttacttcaagat
cttcatttgaggtcagagaatcctgaaaatgacagggagagcagcggcggcagtagtagt
agcagtagtgtgattttggtcaatcctttcaatgaagaggcaataattcttcacagtcct
gataatatgaaccaaccagaaaacccgagtcaaaacgtgtcaatttctttccaggactat
cttataggacctgatgtggatttattgctacatcatttggcagagagtggtcctaaccga
tacgggactcctccagcagagaaagaagcagttaaagcaatgccaacaatttccattacg
cagaatttgcagtgttcagtttgcctggaagagttcgacattggatgtgaagcaaaggag
atgccatgtaaacacaaatttcatggagagtgtattgttccatggctggaacttcatagt
tcctgcccagtttgcaggttcctaatgccctctgatgattccacgactggagtaagccag
tcgagaagtgacgaagagagaacggagagcaacgatgctaggatcattaataatgggaga
aggtattgggtccctatcccatggccttttgatggtttgtttcctttatcaggatctcaa
aatggtgggagttcttcatcagcaccctcatcaaccaccatgcgtggaagtgcttcctac
tccgatgaaacttga
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