Populus nigra (Lombardy poplar): 133670419
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Entry
133670419 CDS
T10372
Name
(RefSeq) LOW QUALITY PROTEIN: probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133670419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670419
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133670419
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133670419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
133670419
NCBI-ProteinID:
XP_061946891
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All DBs
Position
13:7299730..7305381
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AA seq
675 aa
AA seq
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MSALLNSSLNGSASNLPDTTGRSFATSFSGQSGAASPVFHHSGTFQGLHNIHGSFNVPSM
PGTLASRNSTVNNIPSGGVQQPTGSLSGGRFASNNLPVGLSQLSHGSSHGHSGVTNRGGI
SVVGNLGYGSNTNGIGGSIPGILPASAGIGNRNAVPGLGVSQILGNTGPRITSPGGTMVS
SGNIGRSLSTGGNKXGLSVPGLASRLNLTANSGSSSLSVQGQNRLMGGVLPQGNPQVIPM
LGNSYHTAVGPLSQSHVPGVKNLSSMGMGMLNDVNSNDISPFDINNDFPQLTSHPSSAGG
PQGQLGSLRKPGIGVSPIVQQSQEFSIQNEDFPALPGFKGGNADYTMDMHQKEQLHDNTI
SRMQSQHFSIGRSAGFNLGDTYSSYCPQQQQQQQQQQQQQHSPAVSSSISFASINNQDLH
DSEIFPSSHSAYHPQTSGPPGLGLRPLNLPNTVSSVGSYDQLIQQYQHPSHSQFRLQQMS
AVNQPFRDQGIKSMQAAQSAPDPFRLLGLLRVIRMSDPDLTSLALGIDLTTLGLNLNSTE
NLHKTFGSPWSEEPAKGDFEFNVPKCYYAKPPPPLDHHYFSKFSAETLLYAFYSMPKDEA
QLHAANILYERGWLYHKEQRRWLKRVPNTEPLVKTSAYERGSYHCFEPNTFEIKLKENFV
LHYEMVEKRPSLPHH
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgttacttaattcttctttaaacggatcagcttcaaatcttccagataccacg
ggacgatcttttgctacatccttctctggtcagtctggtgcagcatctcctgtttttcat
cacagtggaacttttcaagggctgcataatattcatgggagctttaatgtacccagcatg
ccaggaacacttgcatcaagaaactccacagtgaacaacattccttcgggtggggttcaa
caaccaactggaagtctctccggtggaaggtttgcatccaataatcttcctgttggtctc
tctcagttgtcacatggtagttcccatggacattcaggggttacaaatagaggaggtata
agcgttgtaggaaatctgggatatggtagtaacacaaatggaattggtggttctatacct
ggaattctcccagcctctgctggaataggtaaccggaatgctgttccaggtttgggggta
tcccaaattctgggtaatacaggtccaaggattacgagtcctggagggaccatggtatct
agtgggaacattgggagaagcttaagcacaggtggaaacaaatagggactatctgtccct
ggtcttgcatctcgtctgaatttaactgcaaatagtggatctagcagtttaagtgtgcaa
ggacaaaatagattaatgggtggtgtgcttccacaaggaaatccacaggtaattcctatg
ttaggaaattcataccatactgctgttggtcctctttcccaaagccatgtaccgggtgtg
aaaaatctcagctctatgggaatgggaatgttgaatgatgtgaactccaatgacatttcc
ccttttgacattaacaatgatttccctcagttgacaagtcatcctagttctgctggaggg
cctcaaggtcaattgggttcactacgaaaacctggtataggagttagtcccattgttcaa
caaagccaagagttcagcattcagaatgaagattttccagctttaccaggatttaaaggt
ggtaatgctgattatacaatggatatgcatcagaaagaacaactgcatgataatactatc
tcaaggatgcaatctcagcacttctctattggaagatctgctgggttcaacttaggagac
acttactcatcatattgtcctcagcagcagcagcaacagcaacagcaacagcaacagcaa
cactcccctgctgtcagtagtagcatctcttttgcatctataaacaatcaagatctacat
gattcagaaatatttccttcttcgcattcggcctatcacccacagaccagtggaccacct
ggacttggtctgagacctttaaatttgccaaatacagtatctagtgttggatcatacgac
cagctcatccagcagtatcaacacccaagccattcccagtttcgactacaacaaatgtcg
gctgtcaatcaaccatttagagatcagggcataaaatccatgcaggcagcacaatctgcg
cctgatccatttaggttacttggcttgttaagggttataaggatgagtgatcctgatctg
acctccctggcacttgggattgatttgaccacgcttggattgaatttgaattcaacagaa
aatcttcacaagacttttggctccccatggtctgaagagcctgctaagggtgattttgag
ttcaatgttccaaaatgctattatgctaagccaccacctccactggatcatcattacttt
tcaaaattctcagcagaaacattgctttatgcattttacagcatgccaaaagatgaagct
caactacatgctgccaacatactttatgaaagaggctggttgtaccacaaggagcaacgg
cgttggttaaaaagagtacccaacacagagccacttgttaaaacgagcgcatatgagaga
gggtcttaccattgtttcgaaccaaatacatttgagataaagctcaaggaaaatttcgtt
ctccattatgagatggtggaaaagagaccgagcctaccacatcattaa
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