Populus nigra (Lombardy poplar): 133670686
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Entry
133670686 CDS
T10372
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz00040
Pentose and glucuronate interconversions
pnz01100
Metabolic pathways
Module
pnz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
133670686
Enzymes [BR:
pnz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
133670686
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
133670686
NCBI-ProteinID:
XP_061947238
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Position
13:118802..120332
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AA seq
396 aa
AA seq
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MAGVPLPMIPHPITLFFIIFFAFSPLAKAAQFSVLSYGAKPDGKTDSTKAFAAAWAQACA
STQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVAPSDYKVIGNAKNWLIFEHVN
GVTVTGGTLDGQGAGLWSCKNSGKGCPRGATSLEFSNSKNIAITGLASLNSQLFHIVING
CQNVKVQGVKVSAAGNSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVA
CGPGHGISIGSLGKESQEAGVQNVTVKTTTFTGTENGLRIKSWGRPSNGFARDILFQHAV
MSNVKNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCSKKYPCTG
IKLEDVKLTYKNQPAEASCSNAGGVASGLVQPTSCL
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgttccacttccaatgatcccccatcctattacccttttcttcatcattttc
tttgccttctcacctctagcaaaggcagcacaatttagtgtgttaagttatggtgccaaa
cctgatggaaaaactgactcaaccaaggcctttgctgctgcttgggcacaggcatgtgcc
tcaacacaaccagccacaatttctgttcctaaagggagtttctctttaggtcaagtgagg
tttcagggtccttgcaagaaccgtgctatcttggtacgtatagatggcaccctagtcgcc
ccatcagattataaagtcattggtaacgctaaaaattggctaatctttgagcatgttaat
ggggttactgtaactggagggactcttgatggccagggtgctggactgtggtcttgtaag
aattccggcaagggttgccccagaggcgcaacgtcacttgagttttccaattcaaaaaac
attgcaatcactggattggcatcattaaatagccagttgtttcacattgtcatcaatggt
tgccaaaacgtcaaagtgcaaggagtcaaagtctctgccgccggaaacagccctaacacg
gatggcattcacgttcaatcatcaaccggtgtcaccatattgaattctaggattggaaca
ggtgacgactgtgtatcgattggccccggtacctcaagtttgtggattgaaaatgtggca
tgtggacctggccatggaatcagcattggaagtttaggcaaagaatcccaagaggctggt
gtgcaaaatgttacagtcaagactactacatttaccggtacagaaaatggactgagaatt
aagtcatggggaaggcctagcaatggttttgctagagatattcttttccaacacgcagtc
atgagtaatgtcaaaaatcccattgtaatagaccaaaactattgccccggcgagaagaat
tgccctggccaggtttctggtgtgaaaataagtgatgtgacctaccaagacattcatgga
tcatcagcaacagaagtggcggtcaaatttgattgtagcaaaaaatatccatgcactggg
atcaaattagaagatgtaaagctcacttacaagaatcagccagctgaagcatcatgcagc
aatgctggtggagttgcttcaggacttgttcagcccactagctgtctataa
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