Populus nigra (Lombardy poplar): 133670813
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Entry
133670813 CDS
T10372
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
133670813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670813
03009 Ribosome biogenesis [BR:
pnz03009
]
133670813
04131 Membrane trafficking [BR:
pnz04131
]
133670813
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133670813
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
133670813
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
133670813
Membrane trafficking [BR:
pnz04131
]
SNARE
SNARE associated proteins
Others
133670813
Autophagy
Aggrephagy
Other aggrephagy associated proteins
133670813
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133670813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
CDC48_2
TIP49
AAA_22
AAA_33
AAA_14
RNA_helicase
Parvo_NS1
NPHP3_N
AAA_28
nSTAND3
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_18
ABC_tran
AAA_7
AAA_lid_PRS2_C
AAA_24
DUF815
TsaE
NB-ARC
Sigma54_activat
NACHT
Viral_helicase1
ResIII
SLFN-g3_helicase
Vps4_C
Sigma54_activ_2
PEX6_4th
Motif
Other DBs
NCBI-GeneID:
133670813
NCBI-ProteinID:
XP_061947401
LinkDB
All DBs
Position
13:12147317..12154709
Genome browser
AA seq
816 aa
AA seq
DB search
MKTGHLDRKSCASLCRLALKKASNKRRETDIDGNFLVVIAFIKAMASSPVPDFDTNSKNG
SIKRDFSDSIMGRNKKAPNNLLVDEAINDDNSVITLNPATMEQLDIFRGDNLLIKGKKRR
DTVCIALADDRCDQPKILMNKVVRSNLRVRLGDMVSVQLCHNLQYGKRVHILPLDDTVDG
LSGSLFDAYLKPYFKDSHRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVEPDTEIFCE
GEAVKREDEERLDGIGYDDLGGVRKQLALIREMVELPLRFPQLFKTIGVKPPRGILLYGP
PGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKNAPAIVFIDEI
DSIAPKREKTGGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSLDPALRRFGRFDKE
IDIGVPDEVGRLEVLRVHTKKMKLSEDVDLEKVAKGTQGYVGADLAALCSESALQCIREK
MGIIDLEDDTIDAEVLNSMAVTNEHFSIALGTSNPSALRETIVEVPNVRWEDIGGLEKVK
MELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE
LLTMWFGESEANVRDVFDKARQSAPCVIFFDELDSIAIQRGNSVGDAGGAADRVLNQLLT
EMDGLSAKKTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDEGSRLQIFKACLRKSPV
SKDVDLHVLAKHTEGFSGADITEICQRACKYAVREDIEKDIKRKIEGLEDSMEEGMTWLK
VSHFEESMRYARRSVSDSDILKYQMFSQTLQHQLMV
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactggacatttagacaggaaatcttgtgcttcgctatgccgtttggcattgaaa
aaggcttcaaacaaacgaagagaaacagatatagatggaaacttcttagtggtcatagca
ttcataaaagcaatggcatcatctccagttccagactttgatacgaactcaaaaaatgga
tctataaagagagattttagtgattcaattatggggcgcaataagaaggcacccaacaat
cttcttgttgatgaagccattaacgatgacaactctgtcatcacgctcaatccagctaca
atggagcaacttgatattttccgcggggataacttgttgatcaagggaaagaagaggagg
gatacagtttgtattgccctagctgatgatcgttgcgatcagcccaagattctgatgaat
aaggttgtgaggtcaaacttaagggtcaggcttggcgatatggtttcggtgcagctatgt
cataacttgcagtatggcaagagggttcacattctgcctttggatgacacagttgatggc
cttagtggtagtctgtttgatgcctacttgaagccttactttaaggattctcatcgtcct
gtccggaaaggagatcttttccttgtcagaggaggaatgaggagtgtggagtttaaggtc
attgagaccgatcctgctgagtactgtgtggttgagcctgatacggaaatcttctgtgaa
ggggaagctgtgaagagggaagatgaggaaaggcttgatgggattggctatgatgatctt
ggtggcgttaggaaacaattggcactaatcagggagatggtcgaactgccattaaggttt
ccacaacttttcaagaccattggtgtgaagccaccgagaggaattctgctttatggtcct
cctggaacaggtaaaacattgatagcaagggctattgctaatgaaactggggctttcttc
ttttgtatcaatggaccagaaatcatgtccaagatggcaggagagagtgagcaaaatctg
agaaaagcttttgaagaagctgaaaagaatgctcctgcaattgtatttattgatgagatt
gattcaattgctcccaaacgtgagaaaactggtggggaagtagagagacgaatcgtttca
caactactgactcttatggatgggctaaaggctcgtgcccatgttattgttataggagct
acaaacaggcctaacagtctagaccctgcattgaggaggtttggaaggtttgacaaagaa
atagatattggtgttccagatgaagttggtcgccttgaggttcttcgtgtccatacaaag
aaaatgaagctctctgaagatgtagacttggaaaaagtagccaaaggaactcaggggtat
gttggtgcagatcttgcagctctttgcagcgaatctgccctacaatgcattagggaaaag
atgggcatcattgatttggaagatgataccattgatgctgaggttcttaattccatggcc
gttacaaatgagcacttcagcattgctctcggaaccagcaatccttctgctcttcgtgaa
accattgtagaagttcccaatgttagatgggaggatattggtggtcttgagaaggtcaag
atggagcttcaagagactgttcaatatccggtggagcatcctgagaagtttgagaagttc
ggcatgtcaccttctaaaggagttcttttctatggtcctcctggttgtggcaaaacattg
ctggctaaggctattgccaacgaatgtcaagctaatttcatcagtatcaagggtcctgag
cttctaaccatgtggtttggtgagagtgaagccaatgtcagggatgttttcgacaaggca
cgccagtctgctccttgtgtcatattcttcgatgaacttgactccattgctattcaaaga
ggaaacagtgtaggagatgctggtggtgcagctgatagagttttgaaccaactcctaact
gagatggatggtttatcagccaagaaaaccgtctttataattggtgctaccaacaggcct
gatataatcgaccctgcacttatgaggccaggtcgccttgaccagctaatttatatccct
ctgccagacgaaggttctcgactacagatctttaaggcttgcttgagaaaatcacccgtc
tcaaaagatgttgaccttcatgttcttgccaagcacactgaaggctttagtggtgctgat
atcacagaaatctgtcagagggcttgcaaatatgctgtcagggaggacatcgaaaaggat
atcaagaggaagatcgagggcctggaagacagcatggaagaaggaatgacttggcttaag
gtttctcactttgaagagtccatgaggtacgctaggaggagtgtgagtgactctgatatt
ctcaagtaccagatgttttctcaaactttgcaacatcagctgatggtctaa
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