Populus nigra (Lombardy poplar): 133670910
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Entry
133670910 CDS
T10372
Name
(RefSeq) protein ESSENTIAL FOR POTEXVIRUS ACCUMULATION 1-like isoform X1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670910
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133670910
Surveillance factors
Other surveillance factors
133670910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
Motif
Other DBs
NCBI-GeneID:
133670910
NCBI-ProteinID:
XP_061947493
LinkDB
All DBs
Position
13:complement(5580897..5588924)
Genome browser
AA seq
1599 aa
AA seq
DB search
MTDGKLNLPDDLLLSSKSADEPLSSFKDQLTVDNTIPLSPQWLYAKPVDAKSLTAGASGE
TRASNSLSLGNSIDNNLKDNWRLDGTQDKKDRRRIASDIESSRRWREEERDTGLLGRRDR
RKEDHRADSVSTRDISENRTLSSSDRWHDSNNRISGHESRRDSKWSSRWGPEDKEKGSLT
DKRADVEKEDTHSDKQNFGTASRPTSDLENDSRDKWRPRHRMEVHAGGPAAYRSAPGFGS
DRGRVESSNVRFAAGRGRSNNSGNFQNGRHLNSSPIGSIPVNKNHTFCYPRGKLLDIYRK
HKTLPSFDPMPDGVEHASPITQETAIKPLAFVSPDAEEEAVLGDIWQGKITSSGGLKSSF
RDNDTSNNNTTGFGEVPLGEGNPNSSVKTEEIADSFGKITVNASGQGIGSEMLDTSMAEE
KDSQKDGTQKLTTTIGRELTDDFVPAVSKKDDSSSVGECGPSNNVVELKAFEMSSVEDVA
SKKHLKLGDNEPTTFEIGSQLPGDSSSLFDFIIPLEELSLCYLDPQGAIQGPYLGIDIIA
WFEQGYFGTDLPVRLSDAPSGLPFFELGDIMPHLKLKPGCASSTSPSAKLQLSEPVGESL
EGSALPPASSLEFKGSSVREELQYASSGFEAIPSVSGRSRIPDHGFRPRTVDSDDQRFQN
IVTLDEEIVFPGRPGSSGNPLITDAAGIQSFVSNPPSHPVILNEFSETGMLTHQDEIVHP
FGLLMSELRSKSHPKHAQASYMASSMSEGHAVDPYTERDAALASHRSFDAVSDQSRYTDT
WPEDYSKKPLMNPHIDLGSTDARHLFQRQPEFNDFDQQHLMPQKMQNERQQQNHASHPFL
QELGFEQIPSHLIELQFQQQRKLELQQQWQLELQRQQQLELQRQRQLELQRQRQLELQRR
QQFELQRRQQLEHQRRQQFELQQQLQQFELQQQHHLLHQQQQQQQLHQYQMKLQQQQVLE
QLLQHQMSDLGYGQGKGDPMRDNLVDQSQFRTPLPELQRNLHIPRHLDLSLEQVIRAKIG
QNNLQEPQTDILDLLSQVKHGNILPSDLQFHHQLEQMQAQELSLARSTGFNTSDCHLQQQ
RQSSHDEHLSHIKWNHALQELHQGGFYEPSSMAFDHLTSLPASTLGIKLDNVNGHSQGPD
SAEHLYMHPAEQLGSVSSNAPSCDQQVLDDIYASHPEMTENYFPGKRRQQENSWVEGGMQ
QLLHHENERKRNVSEASGNSSIWLSGQRDEESSKQVLMDLHQNIGLQSIHSSEDDYGHLI
SSSKSRESFWLITDSSSPNHNPDQEVAMNNSFMDRPQHLNSNSLLHDNPAMALSGQLHLG
NGERLHGSNSGALPEEPTFLSGMIDTSQANHVDNRFGSKYTKDKDLAELDNRSGSKCVRA
MSRSVLHMEENFVEQAETAMDLVNAHSRHSSLSSAGGYGGLHGYEMGLDNSTSEEVSNDR
VILSKGLDNSLHKHPPVSRALSSLDVLSDMASASHNKHKNPTSIATSDERRNESVENLAA
AWGGDTQASGMKEVRFRRTASYNDAGITETSFIDVLKKPVFSEAEAANAAALESSDGSLT
GRSGKKKGKKGRQIDPALLGFKVSSNRIMMGEIQHLDDN
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgactgacggaaagctcaatctacctgacgatctcctcctctcctccaaatcagccgat
gaacccctctcctccttcaaagatcaattgactgtggacaacacaataccactttctcct
caatggctttatgctaagccggtggatgctaagtcattaactgctggagcatcaggggaa
acacgtgcatcaaattctttgtcccttggaaactccattgataacaatttgaaagacaat
tggcgtttagatggaacccaagacaagaaagatcggaggaggattgcttctgacatagaa
agtagccgtcgctggcgtgaggaggagagggatacaggcttgcttggtagaagagatcgc
agaaaagaggaccatcgcgctgattctgtttcaaccagagatatatctgagaataggact
ttgtcttcttcagatcgttggcatgacagcaataaccgcatttctgggcatgaatcccga
agagacagcaagtggtcatctaggtggggtccggaagataaagagaagggttctttaact
gataagagggcagatgttgagaaagaagacacccacagcgacaaacaaaattttggcaca
gctagccgcccaacttctgaccttgagaatgattctcgtgataagtggaggcctcgccat
cgtatggaagttcatgctggtggacctgctgcgtaccggagcgcacctggatttgggtct
gatagaggacgagtggagagctcaaatgtgcggtttgctgctggacgagggaggtctaac
aatagtgggaactttcaaaatggcaggcatcttaattcttctcctattgggtccattcct
gtgaataaaaatcatacattctgttatccaaggggaaaacttcttgacatttaccgaaag
cataagactcttccaagttttgatcctatgccagatggggtggaacatgcatctccaata
acccaggaaactgctatcaagccattggcttttgtttcccctgatgcagaggaagaggct
gtccttggagatatatggcaggggaaaatcacaagcagtggaggattgaaaagctcattt
agagacaatgacacatcaaataataatactacaggctttggtgaggtgcctttaggtgag
gggaacccaaattcctctgttaagactgaagaaattgctgactcttttggaaaaattact
gttaatgcttctggtcaaggtattggttctgagatgttagatacatcaatggctgaggaa
aaggattcacaaaaagatggcacacagaagcttacaacaacaattggcagagagttgacg
gatgactttgtgcctgcagtttccaagaaagacgattccagcagtgtcggggagtgtggc
ccaagcaacaatgttgtggagttgaaagcttttgaaatgtcatcagtggaagatgtggct
tcaaagaagcaccttaagttgggggataatgaaccaactacttttgagattggtagccag
cttcctggcgattcaagttctctatttgattttattattccactcgaggagctatcattg
tgctatcttgatcctcaaggggcaatccagggaccataccttggtattgatatcattgca
tggtttgagcaaggatattttggaactgatctaccagttcgtttgtcagatgctcccagt
ggattacccttctttgagcttggagatattatgcctcaccttaaacttaaacctgggtgc
gcttcaagcactagtccatctgctaagttacaactatcggaacctgttggagaaagcttg
gaagggagcgcactgcctcctgcttcttctcttgaattcaagggttcttctgtcagggaa
gaactgcagtatgcctcatctggatttgaggccatccctagtgttagtggtcggtcaaga
atacctgatcatggttttcgccccaggacagtggattctgatgatcaaagattccaaaat
attgttactttggatgaagaaattgtctttcctggaaggcctggaagcagtggcaaccct
ttgataacagatgccgcaggcattcagagttttgtttctaatcctcctagccaccctgtc
atcttaaatgaattttcagagactggcatgcttactcatcaggatgaaatagttcatcca
tttggcttgctgatgtctgagctcagaagcaagtctcatccgaagcatgctcaagcatcc
tatatggcttcaagcatgagtgagggtcatgctgtggatccttatacagagcgtgatgct
gctcttgctagccacaggtcctttgatgcagtatctgatcaatcccgttatacagataca
tggccagaagattatagtaaaaagccactcatgaacccccacattgatctaggttccaca
gacgctcgacacttatttcagaggcaacctgagttcaatgattttgaccagcagcatctc
atgccacagaagatgcaaaacgaacgtcaacaacagaatcatgcatctcatcccttctta
caagaactgggttttgagcaaatcccttctcatctgattgaactgcaatttcaacagcag
agaaagttggagctccaacaacagtggcagttggagcttcaacggcagcagcagttggag
cttcaacgtcagcggcagttggagcttcaacgtcagcggcagttggagcttcaacgtcgg
cagcaattcgagcttcaacgtcggcagcagttggagcatcagcggcggcagcagtttgag
cttcagcaacagctgcaacagtttgaacttcagcaacagcatcatttactgcatcaacag
cagcagcaacaacagcttcatcagtaccaaatgaaattgcagcagcagcaggttctggaa
cagttgctgcagcatcagatgtctgatcttggctatgggcagggaaagggagatccaatg
agagacaacttggttgatcagagtcaatttaggacaccacttccagaactgcagcgaaat
ctgcatattccaaggcacttggatctgtcactggagcaggtaattcgagcaaagattggc
cagaataatcttcaagaacctcagactgatatcttagacctcttatcacaggtgaagcat
ggtaatatattgccttcagacctgcaattccatcatcagctagaacagatgcaggcgcaa
gagttgtctttggcaaggtctacaggatttaacacttcagattgtcacctgcaacagcag
aggcaatcctcacatgatgaacatttaagccacatcaaatggaatcatgctttacaggag
ttacatcaaggtgggttttatgagcctagctctatggcatttgaccatctaacttctctt
cctgctagcacactagggattaagttggataatgtaaatggtcattcccaaggtccagat
tcagcagaacatctatatatgcatcctgctgagcaactgggttctgtttcttcaaatgct
ccctcttgcgaccaacaagttcttgatgatatttatgcttctcatcctgaaatgacagag
aactacttccctggaaaacgaaggcagcaagagaatagttgggttgaaggagggatgcaa
cagctgctgcatcatgaaaatgaaagaaaaagaaatgtttcagaagcttctggaaactct
agtatttggttatcaggtcaacgagatgaggagagctcgaagcaagttttaatggatctt
caccaaaacataggtcttcagtctattcactcatcagaagatgattatgggcaccttata
tcctcttcaaagtctcgggaatccttttggctgatcactgattcatcttctccaaatcat
aatccagatcaagaagttgccatgaataactcatttatggataggcctcaacatttgaac
tcaaattctctgttgcatgataatcctgccatggccttgagtggtcaattacacctagga
aatggtgaaagattgcatgggtcaaattctggagcgctaccggaagaaccaacttttttg
tctggcatgatagatacttctcaagctaatcatgtggataacaggtttggttcaaaatat
accaaggataaagacttggcagaattggataacagatctgggtccaaatgtgtgagggcc
atgtccaggtctgttttacacatggaagaaaactttgttgaacaagctgaaactgctatg
gatcttgttaatgcccatagcaggcatagttcactaagcagtgctggtggatatggaggc
ttacatggctatgagatgggattagataattcgaccagtgaagaggtttctaatgacagg
gttatattaagtaaagggcttgacaattccttgcataaacacccaccagtgtcccgagcc
ttatcttccctggatgttttgtcagacatggcatctgcttcgcataacaagcataaaaat
ccaacaagcattgcaacttctgatgaaaggaggaatgagtctgtagagaatttagcagca
gcatggggaggtgatactcaagcatctggcatgaaagaagtgcgttttaggaggactgcg
tcttacaatgatgctggtataacagagacatcattcatagatgtgctaaaaaagcctgtt
ttttctgaggctgaagcagcaaatgcggctgccttggaatcatctgatggttcactgact
ggacgaagtgggaaaaagaaggggaagaaaggaaggcagattgatcctgctctccttggc
ttcaaggtttctagcaatcgcattatgatgggtgagatacaacatcttgatgacaactga
DBGET
integrated database retrieval system
