Populus nigra (Lombardy poplar): 133670944
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Entry
133670944 CDS
T10372
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like
KO
K13192
RNA-binding protein 26
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pnz01009
]
133670944
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133670944
03041 Spliceosome [BR:
pnz03041
]
133670944
Protein phosphatases and associated proteins [BR:
pnz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133670944
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
133670944
Spliceosome [BR:
pnz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
133670944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
PHM7_cyt
RRM_Nup35
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
133670944
NCBI-ProteinID:
XP_061947526
LinkDB
All DBs
Position
13:complement(8305985..8319659)
Genome browser
AA seq
964 aa
AA seq
DB search
MELKVSTLKTGGLSPADCISDPEEKEVSDEDDDDRNHKHRRREIRSQSLERDSLEPVFTR
PYRKRNKPFENGQFYQENDYNSVPLEKGFATKFERIRPGLVSLPRMPVDWNQRIRSNQTF
YGDPGLGRGRGREPVSWNQHDSRFSPVDIASQMVHQGQSLFNGRGLANVSNAQSASWNAY
GLFPGIPNGGLDKLRPIGLQGTLRPAVTSSLNMGIPQQRCRDFEERGFCLRGDMCPMEHG
VNRIVVEDVQSLSQFNLPVSLPRAQLVGTTARPGALPTVGAPSATLINSKGMHSKCNKPG
IVNAGLGFNGAHTGSANVSGGDLYDPDQPLWNDSVPETSSALIAPHSPKIDEIESMISID
SFDHNHVSLRGGADNECPIRSTGIAVHSQSLNSSVWGKVRASNNRLHVKEKTDLTVSMLN
NMESESKENQGGLANVRGTSRQGKQINFEDSSAKTIDSPVKTQSNTMRHTPKPSQKALRT
LFVNGIPQKSNKREALLSHFQKFGEVIDIYIPLNTERAFVQFSKREEAEAALRAPDAVMG
NRFIKLWWANRDSIPDGGAGSSNSVSVTPRGVTSTSFPPHLPIGNSGKDNLQLSVSKATA
VPPSVASVPAIDHSKVITTNVPKVPPPMQKLESLEQLKEELRKKQELLDQKRNDFRRQLD
KLEKQATGVKGEVTAEPASKRHKTGITASDIVKAATPRSADPGSASPHAEMVDKNKTVEN
VVSSSSKTCVMTALQDSAGSKQSIHPLAPVGPPFLMNKYKLDNRPTAFKIISPLPAGLAN
VATLKEYFSSYGDLSAVELEDEPSDYDGVGSETLKNCSACVTFTTRRSAERAFLNGKCWQ
GKNLKFAWLTSSTSSNERGSGQNSSAPNCLVDTDQSVEKLACSDSQEASASGNGGPENSE
INNGTGPIELHEVLQCHSASILGEAESPKCEPSPTSISHEKESTKKDPSQTAMSEKETPE
GIVW
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcaacactaaagacaggtggtctttctcctgctgattgcattagc
gatcctgaggagaaggaagtcagtgatgaggatgatgatgatcgcaaccataagcatcgt
agacgggagatacgttctcaatctttggagagagattctctggaaccagttttcacaagg
ccatacaggaagcgtaacaaaccatttgaaaatgggcaattttaccaggaaaatgactat
aactctgttcctcttgagaaaggctttgccacaaagtttgaaagaatacgacctggcttg
gtgtcattacctcgaatgcctgtggattggaatcaaagaatcaggtcaaaccaaacattt
tatggagatcctggtcttggcaggggaagaggaagggagcctgtttcttggaaccaacat
gattctaggttcagcccagttgacattgcttctcaaatggttcaccaggggcagagcctc
tttaatgggaggggtttggcaaatgtttcaaatgcacagagtgcatcctggaatgcatat
ggtttatttccaggaataccaaatggtggcctggataaactccgtcccattggtttgcaa
ggaactctcagaccagcagtaacttcttcattgaacatgggcattcctcaacaaaggtgt
agagactttgaggagcgtggattttgtctaagaggggacatgtgtccaatggagcatggt
gtcaatcgtattgttgttgaagatgttcagagcctttcacagtttaatctccctgtttca
cttccacgtgcccaactagttggaacaactgctagaccgggggctctcccaactgttggt
gccccttcagccacattgataaatagcaaaggaatgcatagcaaatgtaacaagcctgga
atagtcaatgctggattgggcttcaatggtgcacatactggttctgctaatgtgagtgga
ggagacttgtatgatccagatcaacccctgtggaatgacagtgttcctgaaacttcaagt
gcactcatagcaccacattcacctaaaattgatgaaattgaatccatgataagtattgat
tcttttgatcacaatcatgtcagtttacgtggtggtgctgataatgaatgcccaattaga
agcactgggattgctgtgcattcacagagtttgaattcttctgtttggggtaaagtcagg
gcttcgaacaatagattacatgtgaaagagaaaaccgatttgactgtaagtatgttaaat
aatatggagagtgagtccaaggaaaatcagggtggattagccaatgttcgtggtacttcc
cgtcaaggaaaacaaattaattttgaggattctagcgcaaaaaccatagattcacctgtc
aagacacaaagcaacaccatgcgccacacaccaaaaccatctcaaaaggcactgcgtaca
ctatttgtcaatggcattccacagaaaagcaacaaaagagaggctctactttctcatttt
caaaaatttggagaggttattgacatttatattccattgaacactgagcgagcatttgtt
caattctcaaaaagggaagaggcagaagctgctctaagggcacctgatgctgtaatgggc
aaccgttttatcaagctgtggtgggctaatcgtgatagcattcctgatggtggcgctggc
agtagcaatagtgtatctgtcacaccccggggtgtgacttctacttcatttccaccccat
ctgcctattggtaacagtggaaaagataatcttcagttgtctgtttcaaaggctactgct
gttcctccctctgttgcttctgtccctgccatcgatcactctaaggtcatcacgacaaat
gttccaaaggttccacctcctatgcagaagctagagagtttagaacaattgaaggaggag
ctgcgcaagaagcaggagctgctggatcagaagcggaatgactttcggcgtcagttggac
aagcttgagaaacaagctacaggagtcaagggtgaggtaacagcagagcctgcttcgaag
agacacaaaaccggaataacagcatctgatattgtcaaagctgctactccgaggtctgct
gatccaggttctgcgtccccacatgctgaaatggtggataagaacaaaacagtggagaat
gttgtgtcatctagtagcaaaacatgtgtaatgacggctctgcaggattctgcaggctca
aagcaatcaattcatcctttagcacctgttgggcctccttttctgatgaataaatacaag
ttggacaaccgacctacagcattcaaaattatttcacctttaccagctggtttggcaaat
gttgctactttaaaggaatacttctcatcatatggcgatctttctgctgtggaactagaa
gatgagcctagtgattatgatggtgttggatctgagacactgaaaaattgttcagcttgt
gtgactttcacaactcgccgatcagctgagagggctttcctaaatggtaaatgttggcaa
ggcaagaatttgaagtttgcgtggctgacatctagcacttctagcaatgagcggggaagt
ggacaaaattcatctgctcccaattgtcttgtagatactgatcagtctgttgaaaaacta
gcttgttcggattcccaggaagcttctgcatcaggaaatggaggaccagaaaattcagag
ataaataatggtactggccccatagagttgcatgaagttctccagtgccattcagcctca
atattaggtgaggcagagtcaccgaaatgtgagcctagtccaacatcaatatctcatgag
aaagagtcgacaaaaaaggaccctagtcaaactgcaatgtcagagaaagagacccccgaa
ggcattgtctggtga
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