KEGG   Populus nigra (Lombardy poplar): 133671184
Entry
133671184         CDS       T10372                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    133671184
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pnz04121]
    133671184
   03036 Chromosome and associated proteins [BR:pnz03036]
    133671184
Enzymes [BR:pnz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133671184
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133671184
Chromosome and associated proteins [BR:pnz03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     133671184
    Noncanonical PRC1 (PRC1.1)
     133671184
    Noncanonical PRC1 (PRC1.3/1.5)
     133671184
    Noncanonical PRC1 (PRC1.6)
     133671184
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 DUF7044 zf-UDP zf-rbx1 zf-Nse zf-RING_6 zf-RING_11 zf-C3HC4_5
Other DBs
NCBI-GeneID: 133671184
NCBI-ProteinID: XP_061947826
LinkDB
Position
13:864681..870838
AA seq 497 aa
MPADNTPPSSPHNINPHNEEQQHQQQQQQDLSELSPPRQNGHPTDQEPHHLQNGQHQEEG
EEGEEEVDIKEQEVKKEEEGVEGGGGGDGEEGKEESDGTQSFSSSSSSSSCEDEEKPEFV
FVELPDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRR
SLRDDPNYDALIAALYPDIDKYEEEELAFHEEEMTRNKQIQASIAQIIQRQSEALVKRRT
MGKESTFMTRTRRTITRRRRNSRSSDFQGSEDIEDENDDNIGKDSSSADERSTEVRHRRP
KRRWPSQPSSSAVNSEGGGAENDLDSNRENRGLSPGLAWNTEMLAWGRGGTRSHTRHGNP
SGCNNKNSRNTRLSKLVEYLRSLDEKNDELDIHLKLITLGNQSTPSLQQPYLCCRPSLSV
KHLCEYVAHQTTLQAEEVELLLIKGKAENLSAKHSQIPMDELQILKGQETVAGLKASCSS
SRDHLILAYRQKEIIKS
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgcctgccgacaacacccctccttcttcaccacacaacattaatccccacaatgaagaa
caacaacatcagcagcagcaacaacaagacttgtctgagctgtctcctcctcgacaaaac
ggtcatccaactgaccaagaaccacaccaccttcaaaacggccagcatcaagaagaaggg
gaagagggagaggaagaagtagacatcaaagaacaagaggttaaaaaagaagaagaggga
gtggaaggaggaggaggaggggatggggaagaagggaaagaagaatctgatggaacccag
tctttttcttcgtcatcttcttcttccagttgtgaagatgaggaaaagcccgaatttgtc
tttgtggaacttccggacattcgtaaagatgtgcagtgtcccatatgtttagggatcata
aagaaaacacgaactgtaatggaatgcctgcaccgtttttgcagggaatgtattgataaa
tcaatgcgaatggggaacaatgagtgccctgcttgccgcacacattgtgcaagtcggcgg
tccttgagagacgatccaaattatgatgccctaattgcagctttatatccagacattgat
aagtatgaggaggaggaattggcttttcacgaagaggaaatgactcggaacaaacagatt
caagcttcaattgcccaaataattcaaagacagtcagaagcactagttaagagacgcaca
atgggtaaagagtcaactttcatgacacgaacacgtcggactattacaaggaggcgacgg
aacagtcggagcagtgattttcaaggatctgaagacattgaggatgaaaatgatgacaac
ataggcaaggattcatcttctgctgatgagcgctccactgaagttaggcataggaggcct
aagagacggtggccctcccagccttcttcttcagcagtcaattcagagggtggaggtgct
gaaaatgatttagattcaaacagggaaaacaggggattatctcctgggcttgcgtggaac
acagaaatgcttgcttggggcaggggtggtactcggagtcacacacgacatggcaatcct
agtggttgcaacaacaagaattcacgaaatactcgcttatccaagctagtagaatatctc
agaagcttagatgaaaaaaatgacgagttggatatccatctcaagcttattaccttgggc
aatcaaagtacaccaagcttgcagcagccctacctttgttgccggcccagtttgtcagtt
aaacacctatgtgaatatgttgctcaccagacgactttgcaagctgaggaagttgaactc
ttgttaatcaaggggaaggctgaaaatttgtcagccaaacattctcagatccctatggat
gagctgcaaattttgaagggacaagaaacagttgcaggtcttaaagcaagttgctcttcc
agtagagatcatttgatactagcatatcggcagaaggagatcatcaaaagttga

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