Populus nigra (Lombardy poplar): 133672279
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Entry
133672279 CDS
T10372
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
pnz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133672279
09124 Replication and repair
03420 Nucleotide excision repair
133672279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133672279
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133672279
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
133672279
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
133672279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
SHOCT
GRAM
Motif
Other DBs
NCBI-GeneID:
133672279
NCBI-ProteinID:
XP_061948636
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Position
14:complement(2630257..2639181)
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AA seq
603 aa
AA seq
DB search
MASGQVSKRVKFKSSVKDPGTPGRLFLTLERLMFKPNSPNSATKLNMEFRFVKNHKYTKE
GSNKAPMLNLTSSQGVSYIFEFESYDDLHVCKECVGKALSKTGETPKPIDTSEIPSEQPS
TEELLLRMNMLQENSELQNLHKRFVSDGILTEAEFWATRKKLLGGNFSKKSKQRTGLKSF
VLSDTKPSTDGRTNKVTFTLTPEIVREVFAEKPAVHRAYLDLVPKKMSERDFWSKYCRAE
YLQHAKNANAAAAAAAEAAEDEELALFLKPDDILASETRRKIRCVDPTLNMEADEGDDYT
HLPDHGIVRDGSKEITESQHELYIRTLSQELNRHAAVVLQGTPIDEEQLKDTQTVAEALK
QSKQGQNASNEETDMNANQDRLSRISKMMEIDDLQASSDLPLAPLSIKDPRDYFDSQQAT
ALKNSRDTSIGTDPVKRILSAEESYASLRDSISLIKTTGLVDPIIKPEVAVKVLSVLTHN
ISSTKYDTGKNHGLSVLDTLPNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTKVSRL
KDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSGDRSN
GYT
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgggcaagtgtcaaaacgagtcaagtttaagagttcagtgaaagaccctggc
actcctggtcgattattcctgactttggagaggttgatgttcaaacctaatagtcctaat
tcagctacaaagcttaatatggagtttagattcgttaaaaatcataagtacactaaggag
ggatcgaataaagcaccaatgcttaatctcacttcgagtcagggtgtgagttacatattt
gagtttgaaagttatgatgatctccacgtttgcaaagagtgtgtaggcaaagccctttcg
aagactggagagacaccaaagcctatagacacttcagaaattccttctgaacaacctagc
acagaagaattgcttttgcggatgaatatgctgcaagaaaatagtgagttgcagaacctt
cataagcggtttgtgagtgatggtatcttgacagaagctgaattttgggcaactaggaag
aagttgcttggtgggaacttcagcaaaaagtcaaaacaacggacaggccttaaaagtttc
gtgctttcagacaccaagccatcaacagacggtcgaacaaacaaagttacatttactttg
actcctgagattgttcgtgaggtttttgcagagaaaccagcagtacaccgagcatacttg
gatttagttcccaaaaagatgtcagaaagggatttctggagcaaatattgtagagcagaa
tacctccagcatgcaaaaaatgctaatgctgcagctgctgctgcagcagaagctgctgaa
gatgaggagcttgctcttttcctgaaacctgatgatattttggctagcgaaactcggcgg
aagatcagatgtgttgatccaactctaaacatggaagctgatgaaggggatgattataca
catcttccagatcatgggattgtccgtgatggtagcaaggaaataactgaatcacagcat
gaactatatataagaactctgtcgcaggagctaaacaggcatgccgctgttgttcttcaa
ggaacacctatagatgaggaacaattaaaagacactcagactgtagcagaggcacttaaa
cagtcaaaacagggacagaatgcttcaaatgaagaaactgatatgaatgcaaaccaggac
agattaagtaggatttcaaaaatgatggaaattgatgatcttcaggcgtcaagtgatctt
cctttggcaccactttctatcaaggatccaagggactactttgattctcaacaagctact
gctcttaaaaattcaagagataccagtattggaactgatccagtaaaacgcatcctgagt
gcagaagaatcatatgcttctttgagggactccatttccctcataaaaaccactggattg
gtcgatcccataattaaaccagaagttgcagtaaaggttctttcagtcttgacccacaat
atctcaagcaccaaatatgatactgggaagaatcatgggctaagtgttttggacacattg
ccaaatacaattaaagaggagctgctatatcactggacgtctcttcaggagttattgaag
cattattggtcatcatatccaatcactactacttatctttatactaaggtaagcagattg
aaggatgcaatgtcaaaaattgattcacagctacaggagctgaaggaatctgtgcagtca
gatcttcgacatcaggtcactctacttcttcgaccaatgcaacaggctctcgaggcagcc
atgcaacattatgatgcagaattgcagaagagatcagcgcgcagtggagatagatcaaat
ggatatacctag
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