Populus nigra (Lombardy poplar): 133672476
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Entry
133672476 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pnz03009
]
133672476
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133672476
Ribosome biogenesis [BR:
pnz03009
]
Eukaryotic type
Pre-60S particles
Helicases
133672476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
133672476
NCBI-ProteinID:
XP_061948890
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All DBs
Position
14:13476468..13483197
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AA seq
619 aa
AA seq
DB search
MVKADKTKEKKEKESEHKQEIQLNEEPDVVEEEDDEAQSFEELGLDPRLIRALNKKEISI
AEPTPIQRAAIPLILQGKDVVARAKTGSGKTLAYLLPLLQKLLSTADSNRKKLSPSAFIL
VPSGELCQQVYKEVSSLIDSCKAQLKVVQLTSNMPASDLRNALAGPPDILVSTPSCVAKS
LSVGVLKSESINDSLEILVLDEADLLLSFGYEEDLKALTALVPRRCQCLLMSATSSADVD
KLKKLVLHNPYVLTLPEVEGVKDEVIPKNVQQFWVSCGDRDKLVHILALLKLDLVQKKVL
IFTNAIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDRETKE
KEKANEGSLAETRKSKKHAKQKLDSEFGVVRGIDFKNVHTVINYDMPLSATGYVHRIGRT
GRAYSTGSSVSLVSPDEMEILEEIKSFLGDDENNESNVISPYPLLTKNAVESLRYRAEDT
AKSVTKIAVREARAQDLRNEILNSEKLKAHFEVNPRDLDLLKHDKVLSKKPPAPHLSDVP
DYLLDATTKEASKMVKLARAAMGNNNSGRRQGPKRNFRKSKDPLKSFSAEGPRRGRKGGM
KREGKDGDDTHKHKKKKIL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggctgataaaactaaagagaaaaaggaaaaagagagcgaacacaaacaagaa
atacaattaaacgaggaaccggatgtagtagaagaagaagacgacgaagcacagagcttt
gaagagttagggttagaccctaggctaattcgtgccctaaacaagaaagaaattagcatt
gcagagcccactccaattcagcgagccgctattcctctaatacttcaagggaaagacgtg
gttgcccgagcgaaaacagggtcagggaagacattagcctacttgcttcctttgcttcag
aagcttctcagtacggctgattcgaatcgaaaaaagctttcaccttcagcatttattctg
gtgccaagtggagagttatgtcaacaggtttataaggaggtttcgtcgctgattgattcc
tgtaaagctcaattgaaagttgttcagttgactagcaacatgcctgcttctgatttgcgg
aacgcgttggctgggccgcccgatattttggtgtctactccttcttgtgtagccaagtcc
ttgtcagttggtgtactaaaatcggaatctattaatgactcacttgaaattcttgttctt
gatgaggcagatctcttgttgtcatttggctatgaagaagatctcaaagctcttactgct
cttgtcccaagacgttgtcaatgccttcttatgtctgcaacgtcaagtgctgatgttgac
aaactgaagaagcttgttctgcataatccatatgttttgaccttgccagaagttgaaggt
gtcaaggatgaagttatccccaaaaatgttcagcaattttgggtttcatgtggtgatcgt
gacaagttagttcatattcttgctcttttgaagctggatctggttcagaaaaaagttctg
atatttactaatgccattgatatgagtttcagattgaaattgtttttagagaagtttgga
ataaagtctgctgttttaaatgctgagttgccgcagaattctcgtctccatatcctagag
gaattcaatgctgggctttttgattatttgattgcaacggatgacagagaaacaaaagaa
aaggaaaaagccaacgagggaagtcttgctgagacaagaaaatcaaaaaagcatgccaag
caaaagttggactcagaatttggagtggtgaggggaattgacttcaaaaatgtacacacg
gttataaattatgatatgcctctaagtgccaccggatatgtacatcgaattggacgtact
ggaagagcttacagtactggttcttctgtttctctggtttctccagatgagatggaaatt
ctcgaagaaataaaatcctttttaggggatgacgaaaacaatgaatcgaatgttatttct
ccatatcctttgctcacaaagaatgcagtggagtctttacggtacagggccgaggacaca
gcaaagagtgtgacaaaaattgctgtcagagaagcacgagctcaggatttgagaaatgaa
attcttaactctgaaaagttgaaggctcattttgaagtcaatccaagggatttagatctt
ctaaaacatgacaaagttctgagcaagaagccccctgctccacatctttctgatgtgcct
gactacttattggatgcaacaaccaaggaagcaagcaagatggttaagcttgcgagagct
gcaatgggaaacaacaactctggtcgccgccaaggaccaaagagaaacttcagaaaaagc
aaagaccccctcaagtctttctctgctgaggggccgaggagaggtcgcaaaggtggaatg
aagagagaaggaaaagacggggatgatactcataaacacaagaagaaaaaaattctctaa
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