KEGG   Populus nigra (Lombardy poplar): 133673139
Entry
133673139         CDS       T10372                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RING1-like
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
pnz  Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pnz04131]
    133673139
   04121 Ubiquitin system [BR:pnz04121]
    133673139
Enzymes [BR:pnz01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     133673139
Membrane trafficking [BR:pnz04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    133673139
Ubiquitin system [BR:pnz04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    133673139
SSDB
Motif
Pfam: zf-RING_2 zf-C3HC4_2 Zn_ribbon_19 zf-RING_11 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-ANAPC11 zf-RING_16 zf-Nse zf-HC5HC2H_2 DUF7564 Zn_ribbon_6 DZR Zf_2nd_IFT121 Prok-RING_1 zf-P11 Prok-RING_4 Rad50_zn_hook
Other DBs
NCBI-GeneID: 133673139
NCBI-ProteinID: XP_061949787
LinkDB
Position
14:complement(6079438..6091007)
AA seq 295 aa
MSFTGAPPLPAVTAAATTTSKQYFCYQCNRTVSITASSYDDPFCPICHDSFIEEFETQNP
QNPNPFSDSYFNDPFDPFSSLFPLLFQNSGNFSHPEFPTRPGFSDPNAFNPLEFLRSHLQ
NLHSGGGRVQFVIDNNGHEPGLRFPDGNFGDYFIGSGLEQLIQQLAENDPNRYGTPPASK
KAIEALPTMKVTEEMMKSEMNNQCAVCKDEFEGGEEVKGMPCKHVFHEDCIIPWLNMHNS
CPVCRYELPTDDPDYENRSPGGQGSGGGSAGGMERRFTISIPRAFGGSGGGQSSS
NT seq 888 nt   +upstreamnt  +downstreamnt
atgtccttcaccggagctcccccattacctgcagtgaccgccgcagcaaccaccacatcg
aaacaatatttctgctaccaatgcaaccgcacagtctcgataactgcctcttcctacgat
gatccattttgcccgatttgccacgatagcttcattgaagaattcgaaacccaaaaccct
caaaacccgaatccattctccgactcgtatttcaacgacccatttgaccccttctcttct
ctctttcctctcctcttccaaaactctggcaatttctctcatcctgaatttccaacccga
cccggattctccgacccgaatgcgtttaacccccttgagttcctccgttctcacctccaa
aaccttcattctggtgggggtcgggtccagttcgtgattgacaataatggacacgaacct
ggtcttcgattcccagatggtaattttggtgattattttattgggtcgggtttggagcag
ctgatccaacagttggctgagaatgatccgaacaggtatgggacgcctccggcgtcgaaa
aaggcgattgaggcattgcccacgatgaaggttaccgaggagatgatgaaatcagagatg
aataatcaatgtgctgtgtgtaaagatgagtttgagggaggagaagaagtcaaagggatg
ccatgtaaacatgtgtttcatgaggattgtataataccttggttgaacatgcataattcg
tgtccagtttgtcggtatgagttgcctactgatgatcctgattacgagaatagatctcct
ggagggcaaggtagtggtgggggtagcgctggaggaatggagagaaggttcactatttca
attccgagggcgtttggtggaagtggtggtggacaaagcagttcttga

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