Populus nigra (Lombardy poplar): 133673986
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Entry
133673986 CDS
T10372
Name
(RefSeq) endoribonuclease Dicer homolog 3
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pnz03036
]
133673986
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
133673986
microRNA pathway
RISC loading complex
133673986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
DND1_DSRM
SWI2_SNF2
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-GeneID:
133673986
NCBI-ProteinID:
XP_061950924
LinkDB
All DBs
Position
15:complement(4103115..4117248)
Genome browser
AA seq
1669 aa
AA seq
DB search
MDTAMPDHDPLKRSFGDMMINNNSSSSCLAMDTSSSITDHNDTTPQGLASVLSNHKEFYP
RGYQSKVFEVAVKRNTIAVLETGAGKTMIAVMLIKQIGQAVFYSGVKRLILFLAPTVHLV
NQQYEVIKSQTNFRVGEYYGAKGIDEWSLKSWEKEIDEHDVLVMTPQILLDALRKAFLNL
KMVSLLILDECHRSTGNHPYKKIMKDFYHKMENKPKVFGMTASPVVRKGVSSAMDCEDQL
AELESVLDSQIYTIEDRAEVHVYVPSAKELCRFYDKAWCSYVELKDKIEASWSKFDASML
ALQGSTQSCYKDMDDKLKATRKQLSKDHAKILNCLEDLGLICAYEAIKVCLENAGNPTGE
CKLYQEISLQCRYFLEDVLHIIGESLLHGDNFSLDHGFDCSAALGFGYISPKLHELLQLF
LSFGEAREVLCLIFVERIITAKVVERFMKKVEVLAHFTVSYLTGTNASADALAPKVQMET
LESFRSGKVNLLFATDVVEEGIHVPNCSCVIRFDLPKTVRSYVQSRGRARQNNSHFITML
ERGNTKQQDQLFEIIRSEWSMTDTAINRDPNVWNLKACASEAAKAYVVDVTGASVTADSS
VSLIHRYCQHLPGDRYYTPKPTFQFEVFEQSCRCAMKLPPNAAFQTLVGPTCRNQQLAKQ
LVCLEACKKLHQMGALDDHLLPSVEEPSEIAVVKSKSTSAGAGTTKRKELHGTTCIHALS
GSWGEKLDGATFHAYKFDFSCSIVSQIYSGFILLIESKLDDDVGNIELDLYLVAKIVKSS
ISSCGVVHLDAAQMTKAKRFQEFFFNGLFGKLFTGSKSSREFILQKETTSLWSPSNMYLL
LPLEPWSISSNDWCKIDWKGIEACSSVVEYLKNSFLAARSYSGGGNPLPDNVQSSTIECN
GTNLIHFANALVNLENIKDMVVLAIHTGRIYSIVKVVNDSSAESAFEGNADNVTEFSTYT
QYFNKRYGIVLMHPGQPLLRLKQSHNPHNHLVNFNDEGDSKDGMVGRKQQQHVHMPPELL
IKIDVPISVVKSIYLMPSLMHRLECLMLASQLRQEIDCHAPNFYIPSSLILEAITTLRCC
ESFSMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLGTDCKVQG
YILDSAFDPRRWTAPGQKSVRTPVPCKCGVDTLEVPLDRKFQTESAIVKVGKPCDSGHRW
MGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGINAELDPSLISEAITSASLRSYIPKE
DEIKSLESKLGYTFGVKFVLQEAMTHASMQEQGVTYCYQRLEFLGDSVLDLLITWHLYQS
HTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLLHCSTLLQSQITEYVNSFHESDQGT
KAPKALGDLIESVAGALLIDTKFNLDGVWRIFKPLLSPIVTPEKLELPPLRELVELCDSI
GVFVKEKCTKKAEMVHAQLWVQLDNELLSGEGYEKNRKAAKGKAASCLLKKLQKRGIIYS
RGGSKRRKQDTDPVVDSSSLCFLESEDFSGKTKPKKQKIENQVPGDSNTDCSPAISPSHG
PPVIESINKKKGGPRTSLYDLCKKVQWTMPTFDTTETKSRTAIEFGEGPDKRTGFNSYVS
KIIMNIPSYGVVECAGEASADKKTSYDSAALAMLNELEKRGQLIIDESK
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggatactgcaatgccagaccatgatcctctcaagagaagctttggtgacatgatgatc
aacaacaacagctcttcgagctgtcttgctatggatacttccagtagtattactgatcat
aatgacaccaccccacaaggactagcttctgttcttagtaatcataaggagttttatcca
agagggtatcagtcaaaggtttttgaggtggctgttaagagaaatacaattgctgtgctg
gaaacaggagctggaaagacaatgattgctgttatgttaattaaacagattggtcaagct
gtcttttacagtggtgttaagagattgattcttttcttagctccaacagttcatcttgtt
aatcagcaatatgaagtcattaaatctcaaacaaattttagagtgggagagtactatgga
gctaagggaatagatgagtggtctctgaagtcctgggagaaggaaattgatgagcacgat
gtgttggttatgacaccccagatcctcttggatgccttaagaaaagcatttttgaatcta
aaaatggtatccttgttaatacttgacgagtgtcatcgttccaccggtaaccatccttat
aagaaaattatgaaggatttctatcacaaaatggagaataagccaaaggtttttggaatg
acagcatctcctgtagttagaaaaggtgtctcgtctgccatggactgtgaggatcaacta
gcagaacttgagagtgtattggattctcagatttatactattgaagacagggcagaggtg
catgtctatgttccctctgcaaaagaattatgtagattttatgacaaagcatggtgttct
tatgtggagctgaaagataagattgaagcttcatggtccaagtttgatgcttcaatgtta
gctttgcaaggctcaacacaaagttgttacaaagatatggatgataagcttaaagcaacg
agaaagcagttgtccaaggaccatgcaaagattttgaattgcctagaagatcttggcctc
atatgtgcttatgaggccatcaaggtttgtctagagaatgctggtaaccccactggtgaa
tgcaaattatatcaagaaatttctttgcagtgtagatatttccttgaggatgtgttacat
ataattggtgaatctttgctgcatggtgataatttctctttggatcatgggtttgactgt
tcagcagcattgggttttggctacatatcccccaaactacatgaacttctccaacttttt
ctatcattcggagaagctagggaagtattgtgcctcatttttgttgaaagaattattaca
gcgaaagtggttgaaagatttatgaagaaagttgaggttttagcacatttcactgtttca
tatttgactggaactaatgcatcagctgatgcactggcaccaaaagtgcaaatggagacc
ttggaatcatttcgctctgggaaggtcaatctattatttgccactgacgtggtggaggag
ggaattcatgtgccaaactgctcctgtgtaatacgttttgatctgcctaagacagtccgc
agttatgtccagtctcggggacgagctcgacaaaataattcccactttatcaccatgctt
gaaaggggaaacaccaaacaacaggatcagctatttgaaatcattagaagtgagtggtca
atgacagatacagctataaatagagatcctaatgtatggaatctgaaagcatgtgcttca
gaagcagcaaaggcttatgtggtggatgtgacaggagcatcagtaactgcagactctagt
gttagcctcatacatcgatattgtcaacacctccctggcgacaggtactacacaccaaag
ccaacttttcagtttgaagtttttgaacagtcttgccgctgtgcaatgaagctacctcct
aatgcagcatttcaaacattagttggtccaacatgtaggaatcaacaattagcaaagcag
cttgtatgcttggaagcatgtaagaaattgcatcaaatgggtgctttagatgatcatctt
ctgccatcagttgaagagccttcagaaattgctgttgttaaaagcaagtcaacatctgca
ggtgcaggaactacaaaaaggaaggaattgcatgggacaacttgcattcatgcgttatcc
ggaagttggggagagaaacttgatggagccacttttcatgcttacaagtttgatttctct
tgctccattgtcagtcagatctattctggatttattcttctcattgagtcaaagctcgat
gatgatgtgggaaacattgagttggatctttatttggttgcaaagatagtcaagtcttct
atttcttcatgtggagtagttcacttggatgctgcacagatgacaaaagcaaaacgattt
caagaattctttttcaatggcttgtttggaaagttgtttactggatctaaatcatctagg
gagttcatacttcagaaagaaacaacatcactgtggagtccctcaaacatgtatctgctt
ctaccactagagccatggagcatttccagtaatgattggtgtaaaatagattggaaagga
attgaagcttgctcatctgtggtagaatacttgaagaactcttttttggctgctcggtct
tacagtggtggaggaaatccattacctgataatgttcagtcatccaccatagaatgcaat
ggtacaaatttaatccattttgctaatgctttagtcaacttagagaacattaaagatatg
gtggtactggcaatccacacgggaagaatctactccattgttaaagtcgtgaacgattca
tcagcggagagtgcttttgagggaaatgctgataatgtgacagagttttctacatacaca
cagtacttcaacaaaaggtatggaattgtgctgatgcatccaggacagcctctgttgcgg
ttaaagcaaagccataacccacacaatcatcttgtaaactttaatgatgaaggtgattca
aaagatggcatggttggcagaaaacagcagcaacatgtgcatatgccaccagagcttttg
atcaagattgatgttcctatcagtgttgtaaaatcaatttatctgatgccatctttgatg
caccgtcttgagtgcctgatgttggccagtcaacttagacaagagattgattgtcatgct
cctaatttttacatcccaagctcattgattctggaagcgataacaacacttagatgctgt
gaaagtttttcgatggagcgactggaattgctaggagactcagttctaaagtatgctgtc
agctgccacctatttttaaaatatcccaataaacatgaaggccagttatcttcatggcgc
tcaggggctgtttgtaattcaaccctacataaattgggaacagattgtaaagtacaggga
tatatactagacagtgcatttgatccccgtcgttggactgctcctggacagaaatctgta
cgtactcctgttccttgcaaatgtggggttgatactttagaagtaccattggatcgtaag
ttccaaaccgaaagcgcaattgttaaggttggaaaaccttgtgattcaggccaccgatgg
atgggttccaaaaccatatcagattgtgttgaatctgtcataggggcatactatgtcagt
ggtggattgattgctgcaattcatgtgatgaagtggtttggcattaatgctgaacttgat
ccttcactaataagcgaagcaattacgagtgcatctctacgatcttatatccctaaagaa
gatgagattaagagtctagagtcaaagcttgggtataccttcggtgtcaagtttgtcttg
caggaggccatgactcatgcatctatgcaagaacagggtgttacatactgttaccagagg
cttgaatttcttggtgattctgtgttggacttgcttataacatggcatctctatcagagc
cacacagatgttgatcctggcgagctgactgacttgcgctcagcttctgttaacaatgat
aactttgctcaagttgctgtgaaacaaaacctatatacccatcttcttcattgttctaca
ctccttcaaagtcaaataacagaatatgtaaattcttttcatgaatctgatcaaggcaca
aaggctcccaaggctcttggagacctgattgaaagcgttgcaggggcattattaattgat
acaaagttcaatctcgatggtgtgtggagaatattcaagcccttgttatctccaattgta
acccctgagaaacttgagctgcctccactgcgtgaacttgttgaattatgtgactctata
ggggtttttgtaaaagaaaaatgtaccaagaaagctgagatggttcatgcccagctttgg
gtacagctggacaacgagctcttgtctggagaggggtatgagaagaacaggaaagcagct
aaaggaaaagcagcttcttgtttgttgaagaagctccagaaaagaggcatcatatactca
cgtggaggttcaaagaggaggaaacaggacactgaccctgttgttgattcaagttccctt
tgcttcttagaaagtgaagatttttctggaaaaacaaagccaaaaaagcagaaaatagaa
aaccaagtgcccggagattcaaatacagattgttcccctgccatcagtcctagtcatggt
cccccagtaattgagtcgattaacaagaagaaaggaggacctcgtactagtctttatgat
ctctgtaagaaagttcaatggacaatgcctacatttgacacaacggaaacgaaatccaga
actgcaattgaatttggtgaaggccctgataaaaggacgggatttaacagttatgtatca
aaaatcatcatgaacataccgtcgtatggcgttgttgaatgtgcgggagaggctagtgct
gataagaagacctcatatgactctgcggcacttgcaatgcttaatgagcttgaaaaacgg
ggacagctcatcattgatgaatcaaaataa
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integrated database retrieval system
