Populus nigra (Lombardy poplar): 133674216
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Entry
133674216 CDS
T10372
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
133674216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133674216
03036 Chromosome and associated proteins [BR:
pnz03036
]
133674216
Transcription machinery [BR:
pnz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
133674216
Coactivators
SAGA/TFTC/STAGA complex
133674216
Chromosome and associated proteins [BR:
pnz03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
133674216
STAGA complex
133674216
TFTC complex
133674216
SAGA complex
133674216
SLIK complex
133674216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Cytochrom_D1
WD40_like
RAB3GAP2_N
WD_LRWD1
PROPPIN
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
133674216
NCBI-ProteinID:
XP_061951219
LinkDB
All DBs
Position
15:1329869..1336130
Genome browser
AA seq
686 aa
AA seq
DB search
MDEEAVVKFVETYLKKKGFKQAELAFHEEIQQQHQQQNNSNNAISIHSDPDLSSLLHSLS
QPEDSPARYQDEYSKLRSWAYSSLDLYKNELLRVLYPVFVHCYMDIVAKGHIQEARNFFN
SFREDHEMMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRKSK
WTIILGIVNEHINFQVSPGQPISISDDPDAVTLIGSSQDAANQINKKEIHWGLLEDSLEE
RLEKTGGFLSDTEKMEGETKEGDMDENKKRSIDGGKQGASLKKSKKDKAASATTKIARPE
ANTVSAAPRVKPELPLPVMPTEVEQSILEDLRNRVQLSSVTLPSVSFYTFINTHNGLNCS
SISHDGSLIAGGFSDSSLKVWDMAKLGHQAGNCKSLQIRISLFAILQGENDTAPSEQGQS
PNSGKRSYTLFQGHSGPVHSATFSPLGDFILSSSADTTVRLWSTKLNANLVCYKGHNYPV
WDVQFSPVGQYFASASHDRTARIWSMDRIQPLRIMAGHLSDVDCLQWHANCNYIATGSSD
KTVRLWDVQSGECVRIFIGHRSMILSLAMSPDGRYMASADEDGTIMMWDLSSGRCISPLI
GHNSCVWSLAFSCEGSLLASGSADCTVKLWDVTTSTKAPRTEESKSGNTNRLRLLKTLPT
KSTPVYTLRFSRRNLLFAAGALAKSQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagaagcagtagtgaaatttgtggagacatatttaaagaagaaagggttcaag
caagcagagctcgctttccatgaagaaatccagcagcagcatcaacaacaaaacaacagc
aataatgctatcagtatccactcggatcctgatctctcttccctccttcactccctctct
caaccagaggatagtccggcacgttatcaagatgagtatagtaaactaaggtcatgggct
tatagttcgcttgatctgtacaagaacgagttgcttcgtgtgctttatccagtatttgtc
cattgttatatggatattgttgctaaaggacatatccaagaggcaagaaattttttcaat
agcttccgtgaagatcatgagatgatgcactcacgagaccttcaaaagttggaaggagtt
ctttctccctctcatctggaggaaatggaatttgctcatactcttaggcagagtaaagtc
aacattaagatatgtcagtactccaacgagctcctgatgcagtatcttcggaagtcaaaa
tggactataattctcgggattgtcaatgagcatattaactttcaagtttctcctggacag
cccatctcaatttctgatgatcctgatgctgtaacattaattggaagcagccaggatgca
gctaatcagataaataaaaaagaaatacattgggggttgcttgaagattctttagaagaa
cgattggagaagacagggggttttctctcagatactgaaaagatggaaggagaaaccaaa
gagggggacatggatgagaataagaaaagatcaatagatggtggaaagcaaggagcttca
ctcaaaaagtcaaaaaaggataaagctgctagtgcaacaactaaaattgctcgtcctgaa
gctaatacagtatctgcagcaccacgagtcaaacccgagcttcctttgccagtaatgcca
actgaggtggaacagtctattcttgaggacttgagaaaccgtgtacagttgagtagtgtg
acactgccatctgtcagcttttatacctttatcaacacgcataatggtttaaactgttca
tcaatttcacatgatggatccttgattgctggtggattctcagactcctcactgaaggtt
tgggacatggcaaagcttggacatcaagctggcaattgtaagtctctccaaataaggatt
agtttgtttgctattttgcagggtgaaaatgatactgctccgagtgaacaaggccagagt
ccaaacagtggcaaaagatcttatacattgtttcagggtcattcaggtccagttcattca
gccacttttagccctcttggggattttattttgtcttcttcagcagatacgacagttcga
ttatggagcacaaaactcaatgcaaatcttgtttgttacaagggccataattaccctgtc
tgggatgttcagttcagtcctgtgggacaatattttgccagtgcttcacatgatcgcaca
gcaaggatttggtctatggataggatacagcctttgaggataatggcaggtcatttgtct
gatgttgattgcttgcaatggcatgccaactgcaactacattgccactggctccagtgac
aaaacagttcgactgtgggatgtacaaagcggggagtgtgtccgcatttttattggtcat
aggagtatgattttatcattggccatgtcacctgatggtcgatatatggcatctgctgat
gaagatggcacaatcatgatgtgggacctctcaagtggacgctgcatatcacctttgata
ggccacaattcatgtgtatggtcacttgccttcagttgtgaaggatctcttctagcatct
ggttcagctgactgtactgtaaaattatgggatgtaactacgagcacaaaggccccaagg
acagaagaaagcaaaagtggaaatacaaacagattgagattgttaaaaactttgccgacg
aagtctactccagtttacactttgaggttttcccgtaggaatctgcttttcgctgctgga
gccctcgctaaaagtcagtga
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