KEGG   Populus nigra (Lombardy poplar): 133674268
Entry
133674268         CDS       T10372                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    133674268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pnz03021]
    133674268
Enzymes [BR:pnz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     133674268
Transcription machinery [BR:pnz03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     133674268
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 133674268
NCBI-ProteinID: XP_061951286
LinkDB
Position
15:complement(1223134..1231196)
AA seq 1190 aa
MGASSDYMEDVGPSSKGEVDDMDMDEDLMDTTNLNELGKETLQSFCKKAASLFFDEYGLI
SHQINSYNAFINSGLQRVFDSFGEVAVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWG
GTSSDAEHNMFPRHARLQNMTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHT
ENREIIIGRIPVMVKSDLCWLTTVERGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWIS
NSQGWTVSYKSEVKRNRLIVRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRS
DKEVIDLIDYASNDASIVNIFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESI
EDAISAYLFPRLNSRRHKARFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERE
LKVHVSHALRRMTKALQRDLYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMER
VSGVVGNLGRANPLQTMIDLRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGL
VKNLAVTGVVSTNISESLVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLF
VGELRSMRRRRELPYQVEIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIF
TSLLDKGIIEFIGTEEEEDCCTAWGIKFLLADIEGKQPMKYTHCELDMSFLLGLSCGIIP
FANHDHARRVLYQAQKHSQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCLGKPG
YPLGHNAVLPKPELFNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV
DNKELTDKRRKSEDSITFGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADH
SVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE
NFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDIID
QLHRAKFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQ
PVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVANVIQRAV
PGGRKIRGPYCRVCESVDDLVKVSVPYGAKLLCQELFSMGISLKFDTRVS
NT seq 3573 nt   +upstreamnt  +downstreamnt
atgggtgcatcatcagattacatggaggatgtgggtccgagtagtaagggtgaagttgat
gatatggatatggatgaggatttgatggacacaactaacttaaatgaattggggaaagaa
actttgcaaagtttctgtaagaaggcagcgtctttgttttttgatgagtatggtctcatc
agtcaccaaatcaactcatataatgctttcatcaacagtggactccagagggtctttgat
tcatttggtgaggttgctgttgagcctggatatgactcatctaagcagaaggatggtgaa
tggagacgtgcatcagttaggtttggaaaggtcacccttgatcgaccaagtttttggggt
ggtacttcaagtgatgctgagcataatatgtttcccagacatgccagacttcagaatatg
acatattcagcgagaatgaaaattcatgtcaatgttcaggtatacacacaaactgttggt
agaagtgacaagttcaaaacagggatagacaaagttgttcaaaagaatgttgtacatacc
gaaaacagggaaatcattattggaaggatccctgttatggtgaagtctgacctttgctgg
ctgacaacagttgaaaggggggattgcgattttgatcatggaggctattttttgatcaaa
ggtgcagagaaggtgttcattgcacaagaacaaatttgtatgaagagactttggatttca
aatagtcagggctggaccgtttcatacaaatctgaagttaagaggaacaggttgattgtt
agactagtggagctctctaaattagaatacattaaaggagaaaagaaaggcctctgtgta
tacttcttgtcgacagagatccctttatggatattgttttttgcccttggtgtaaggtct
gacaaagaagtgatagatttgattgattatgccagcaatgatgccagcattgtgaatata
ttctttgcctcaattcatgatgctgatgagaaatgcgagcattttcgtagggaggacaga
gcacttgattatgtggataaactgttaaaaaagaccagattcccaccaaaagaatctatt
gaagatgccattagtgcatatctgtttcccaggcttaatagccgcaggcacaaggctcgt
tttcttggatacatggtgaagtgtcttttggaggcctatactggccacaggaaatgtgac
aatagggatagttttagaaacaagaggtttgagttggctagcgagttgcttgaacgagag
ctaaaagtgcatgtttcacatgcactcaggcgcatgaccaaggctttgcagagagaccta
tatggagaccgtgatgtgcacccaattgaacactatttggatgcttcaatagtgaccaat
ggtttgacgagagcattctcaactggggcatggtgccatcctttcaagtggatggaaagg
gtttctggagttgtgggaaatcttgggcgtgcaaatccattgcaaacgatgatagatctg
cggaaaacaaggcagcaagttctgtacacaggaaaggttggagatgccagatacccccac
ccttctcattggggtagagtttgctttctctccactccagatggtgaaaactgtggcctt
gtaaaaaacttggctgtcactggagttgtcagtaccaatatatcagaatctctagttgat
aaattgtttgatagtgggatggagaaactggttgatgatacttacactaaactggatggg
aagcataaggtgtttctaaatggtgaatgggttggagtctgcgaagattcttgtttgttt
gttggtgagctaagaagcatgcgacgcaggagagaattgccctatcaggtggaaatcaag
agggatgaacaacagagagaagtacgcatattttctgatgctggaaggatcttacgccct
cttttagttgttgagaacttggataaaataaaagcatttaaagggggaaattacatcttc
acttctcttctggacaaggggattattgagtttattggaacagaagaggaagaggactgt
tgtactgcatggggcatcaaatttcttttagcagatattgaggggaagcaacctatgaag
tatacacactgtgaacttgacatgtcctttttattaggtttgagttgtggaattattccc
tttgccaatcatgaccatgcgcgaagggtcctgtaccaagctcaaaaacattctcaacag
gctattggattttccacaacaaatcccaacatcagagttgacaccttgtctcaccaattg
cattacccccaaaggcctctatttcggacaatgatttctgattgtcttggtaaacctgga
tacccacttggtcataatgcagtgctgccaaagccagagttgtttaatggtcagaatgct
atagtggcagttaatgttcatctgggttacaaccaagaggattcgttggtaatgaatcgt
gcttctttagagcgtggtatgttccgctctgagcacattagaagctacaaggcggaggtg
gacaacaaggagctaactgacaagaggcggaagtccgaggattctattacttttgggaaa
atacaaagtaaaattggacgagttgacagccttgatgatgatggatttccttttattggt
gctaatatgcaaagtggtgatattgtgatagggaagtgtgcagaatctggggcagatcat
agtgtaaaactgaagcacacggaaaggggcatggttcagaaagtggtattgtcatctaat
gatgagggaaagaattttgctgtggtgtctttgagacaggttcgatctccttgtcttgga
gacaagttctcaagcatgcatgggcaaaagggtgttctgggcttcttggagtctcaggag
aacttccctttcacaattcaaggagttgttcctgatattgtaataaacccacatgcattt
ccatcacggcaaactcctggtcagctattagaggctgctttaggaaagggaattgcctgt
ggtggctcaaagagatatgctacccctttctccactctctctgttgatgacatcatagac
cagcttcacagggctaaattttcaagatggggaaatgaaagagtctataatggtcgaact
ggtgaaatggttcgttctcttatatttatgggaccaacattctatcagcggctggtccac
atggctgaagacaaagtaaaatttcgcaacactggaccagtacacccacttacaagacag
ccagttgcagaccgtaagcgttttggtggtatcaagttcggtgagatggagcgtgactgc
ctcatagctcatggtgcatctgcaaacctgcatgaacgcctttttactctcagtgactcc
tctgaaatgcatatctgtcagaaatgcaaaaatgtggccaacgtgatccaacgggctgtg
cctggtggccgcaagattaggggtccctattgccgggtttgtgagtctgttgatgacctt
gttaaggttagtgtaccttatggggcgaagttgttgtgccaagagcttttcagcatgggc
ataagtttgaaatttgataccagggtttcttga

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