Populus nigra (Lombardy poplar): 133674280
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Entry
133674280 CDS
T10372
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133674280
03015 mRNA surveillance pathway
133674280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133674280
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133674280
5.6.2.5 RNA 5'-3' helicase
133674280
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133674280
mRNA cycle factors
Common to processing body (P body) and stress granule
133674280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
AAA_16
SRP54
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
133674280
NCBI-ProteinID:
XP_061951310
LinkDB
All DBs
Position
1:complement(37580293..37593313)
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AA seq
1269 aa
AA seq
DB search
MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVNWPTPSDSLAATSSSV
DPTSSDHRAAASNSDHHSDSPAASPAASKSAARGGANSGTQGVVEGLVASMGGLNFEETG
DDDGYDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNW
DLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG
VDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAY
FVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDM
NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGA
PGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATE
PECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYR
MHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPLFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVLNDNFGSVA
SASPNADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTR
GAVHGPIGAVPQVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIGSFNFSSLENP
NSQPSVGSALSQPGYNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFTQV
GFNDPSQDDASQSHFGITNPSQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQGT
QNQKIHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccaagacaacagcctatacgaaacggcgtcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtgaactggcccactccttccgactcacttgccgccacatcctcctccgta
gaccctacctcatccgaccaccgtgccgccgcttccaattccgatcaccactctgattca
cctgctgcgtctcctgctgcgtcaaaatctgctgcgcgtggaggagcgaatagtgggacc
cagggggtggtggaggggttagtggcgagtatgggagggttgaattttgaagagacggga
gatgatgatgggtatgattttgggaaaggggattttacggagcacgcgtgtaggtactgt
ggggtttcgaatcctgcgtgtgtagtgaggtgtaatgtgccgtcctgtagaaagtggttt
tgtaattcgagagggaatacctctggttcgcatattgttaatcatctggttcgagcaaag
cataaagaggtctgtctccataaagacagccctcttggagaaacaatacttgagtgctac
aactgtggttgccgaaatgtgtttctacttggatttatatcagccaagacagaaagtgtt
gttgtcctcctctgtagggaaccttgcttgaatgttaatgcactgaaggacatgaactgg
gacctgagccagtggtgccccctaattgatgataggtgttttctacagtggcttgtgaag
atcccatctgaacaggagcagttgagggcacgccaaattagtgctcaacaaataaataaa
gtagaagaactttggaaaacaaatcctgatgccacccttgaagatcttgagaagcctggt
gttgatgatgaacctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaat
gtatttgctccacttattaagcttgaagctgactacgataaaatgatgaaagagtctcaa
agcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgcatat
tttgtatttccaaaggaggacaatgagttgcgccttgtacccggtgatgagttgcgactg
cgctattctggagatgcagctcatccagcatggcaatcagttgggcacgtgatcaagcta
actgcacaagaggaggttgcactcgagcttcgtgctagtcagggagttcctgttgatatg
aaccatggttttagtgttgattttgtttggaagagtacaagctttgaccgaatgcaggga
gcaatgaaaacttttgcagtggatgaaaccagtgtcagtgggtatatataccatcacttg
ttgggccatgaggttgagaatcaaacagttcgcagtgcattgcctcgccgttttggtgca
cctggtctcccagagctgaatgcatcacaagttcttgctgtgaagaatgtcctccagaag
cctataagtttgattcaaggtccacctggaacaggaaaaactgtcacttctgccgccatt
gtatatcatatggctaaacagggacaaggacaggttttggtgtgtgccccaagtaatgta
gctgtagatcagctagctgagaagataagtgccaccggcttaaaggttgttaggctatgt
gcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcaggtt
agacatctagacacttcagagaaaagtgaacttcacaagttgcaacagttgaaagatgaa
caaggagaactgtccagtagtgatgagaaaaaatacaaagctctgaaacgagcaacagaa
agggaaatttctcaaagtgctgatgtcatctgttgcacttgtgttggtgctggagatcct
cggttggcaaattttaggtttcgccaggtacttattgatgagtcaactcaggcgactgaa
ccagagtgtctcattcctttggtacttggggcgaagcaggtcgtttttgttggtgaccat
tgccagcttggtcctgtcattatgtgcaagaaagctgctcgtgctgggttagcccagtct
ctctttgagcgccttgttttacttggtgtgaaaccaattagattgcaggttcaatatcgc
atgcacccatctctttctgaatttccatccaacagcttttatgaaggcactctgcaaaat
ggtgtgactgtcaatgagagacagtcatcaggcattgatttcccttggcctgtgccaaat
cgtccactgttcttttatgtccagatgggacaagaagagataagtgccagtgggacatcc
tatctaaatcgtactgaggctgcaaatgttgaaaaaattgtaactacgtttttgaggagc
ggtgtagtccctagccagattggagtgataacaccttacgagggacagagagcatatatt
gtgaattatatgtcaagaaacggtgccctcagacagcaactatacaaagaaattgaggtt
gcaagtgttgattcatttcaaggaagggaaaaggactacattattttgtcttgtgttagg
agcaacgaacatcagggcattggatttcttaatgatcctcggagattgaatgtagctcta
acccgtgctcgatatggtattgtcatcttgggaaaccctaaagttctaagtaagcagcct
ttgtggaatagcttattaactcactacaaggaacatgagtgcttggttgaaggacctttg
aataacttgaagcagagtatggttcaatttcaaaagcccaaaaagatttataacgatagg
aggcttttctttggtggtggacctggaattgtccttaatgataattttgggtctgttgcc
tcagctagcccaaatgctgatagaagaaactcccgtgccaggggatcttatatgccacct
gccccacccaatggtacccacaagcctggtgctcatcctgctgggtttccaatgcctcgg
gtccccattccaccatttcatggtgatccaccttctcaaccatatgctattccaactcgt
ggggctgtgcatgggccaattggagctgttcctcaagtccctcagccaggaagtcgaggt
tttggtgctgggcgcggcaatgctggtgcacctattggaagtcatctcccacaccagcaa
ggcactcagcaaggcattgggaacattggatctttcaatttttcttccctggagaatcca
aatagccagccatctgtgggtagtgcattatctcagcctggatataataatattccagtt
cagggatcgagccaaacatttcgtgatggattttccatggggggtatgtcccaggagttc
ttgggtgatgatttcaaaagccagggatcgcatgttccttacaatgttgctgatttctcc
actcaggcatctcaaagtggatatgctgtggattatgttacgcaaggagcccaaggcggg
tttccaggcaacttcttgaatcagaattctcaagctggattttctcgttttggttctgga
aatgatttcatgtctcaggattacatggctcatggatcacaagggctgttcactcaggtt
ggctttaatgatccctcacaagatgatgcatcgcaaagccactttggcataaccaatccg
agccaacttcaatctcagggcttgatgaattccctttactctcagccctttgcccactac
aacactcagccggtgaacttacaggctccacaacagcagtctcagcagggtcagggcacc
caaaaccagaaaatccattacaacggttga
DBGET
integrated database retrieval system
