Populus nigra (Lombardy poplar): 133674280
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Entry
133674280 CDS
T10372
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
Brite
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
133674280
5.6.2.5 RNA 5'-3' helicase
133674280
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133674280
mRNA cycle factors
Common to processing body (P body) and stress granule
133674280
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
133674280
NCBI-ProteinID:
XP_061951310
LinkDB
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Position
1:complement(37580293..37593313)
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AA seq
1269 aa
AA seq
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MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVNWPTPSDSLAATSSSV
DPTSSDHRAAASNSDHHSDSPAASPAASKSAARGGANSGTQGVVEGLVASMGGLNFEETG
DDDGYDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNW
DLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG
VDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAY
FVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDM
NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGA
PGLPELNASQVLAVKNVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATE
PECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYR
MHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPLFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVLNDNFGSVA
SASPNADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIPPFHGDPPSQPYAIPTR
GAVHGPIGAVPQVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIGSFNFSSLENP
NSQPSVGSALSQPGYNNIPVQGSSQTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFTQV
GFNDPSQDDASQSHFGITNPSQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQGT
QNQKIHYNG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggatgcccaagacaacagcctatacgaaacggcgtcgcagccagacacagcaacagac
gcctacaccttccttgaattcaacacacaaggcgaatccgattttgactaccccgaattc
cgctctccggtgaactggcccactccttccgactcacttgccgccacatcctcctccgta
gaccctacctcatccgaccaccgtgccgccgcttccaattccgatcaccactctgattca
cctgctgcgtctcctgctgcgtcaaaatctgctgcgcgtggaggagcgaatagtgggacc
cagggggtggtggaggggttagtggcgagtatgggagggttgaattttgaagagacggga
gatgatgatgggtatgattttgggaaaggggattttacggagcacgcgtgtaggtactgt
ggggtttcgaatcctgcgtgtgtagtgaggtgtaatgtgccgtcctgtagaaagtggttt
tgtaattcgagagggaatacctctggttcgcatattgttaatcatctggttcgagcaaag
cataaagaggtctgtctccataaagacagccctcttggagaaacaatacttgagtgctac
aactgtggttgccgaaatgtgtttctacttggatttatatcagccaagacagaaagtgtt
gttgtcctcctctgtagggaaccttgcttgaatgttaatgcactgaaggacatgaactgg
gacctgagccagtggtgccccctaattgatgataggtgttttctacagtggcttgtgaag
atcccatctgaacaggagcagttgagggcacgccaaattagtgctcaacaaataaataaa
gtagaagaactttggaaaacaaatcctgatgccacccttgaagatcttgagaagcctggt
gttgatgatgaacctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaat
gtatttgctccacttattaagcttgaagctgactacgataaaatgatgaaagagtctcaa
agcaaggataatgtcactattcgatgggatattggccttaacaagaagcgtgttgcatat
tttgtatttccaaaggaggacaatgagttgcgccttgtacccggtgatgagttgcgactg
cgctattctggagatgcagctcatccagcatggcaatcagttgggcacgtgatcaagcta
actgcacaagaggaggttgcactcgagcttcgtgctagtcagggagttcctgttgatatg
aaccatggttttagtgttgattttgtttggaagagtacaagctttgaccgaatgcaggga
gcaatgaaaacttttgcagtggatgaaaccagtgtcagtgggtatatataccatcacttg
ttgggccatgaggttgagaatcaaacagttcgcagtgcattgcctcgccgttttggtgca
cctggtctcccagagctgaatgcatcacaagttcttgctgtgaagaatgtcctccagaag
cctataagtttgattcaaggtccacctggaacaggaaaaactgtcacttctgccgccatt
gtatatcatatggctaaacagggacaaggacaggttttggtgtgtgccccaagtaatgta
gctgtagatcagctagctgagaagataagtgccaccggcttaaaggttgttaggctatgt
gcaaaatcaagggaagctgttagttctcctgttgagcatctcacccttcactatcaggtt
agacatctagacacttcagagaaaagtgaacttcacaagttgcaacagttgaaagatgaa
caaggagaactgtccagtagtgatgagaaaaaatacaaagctctgaaacgagcaacagaa
agggaaatttctcaaagtgctgatgtcatctgttgcacttgtgttggtgctggagatcct
cggttggcaaattttaggtttcgccaggtacttattgatgagtcaactcaggcgactgaa
ccagagtgtctcattcctttggtacttggggcgaagcaggtcgtttttgttggtgaccat
tgccagcttggtcctgtcattatgtgcaagaaagctgctcgtgctgggttagcccagtct
ctctttgagcgccttgttttacttggtgtgaaaccaattagattgcaggttcaatatcgc
atgcacccatctctttctgaatttccatccaacagcttttatgaaggcactctgcaaaat
ggtgtgactgtcaatgagagacagtcatcaggcattgatttcccttggcctgtgccaaat
cgtccactgttcttttatgtccagatgggacaagaagagataagtgccagtgggacatcc
tatctaaatcgtactgaggctgcaaatgttgaaaaaattgtaactacgtttttgaggagc
ggtgtagtccctagccagattggagtgataacaccttacgagggacagagagcatatatt
gtgaattatatgtcaagaaacggtgccctcagacagcaactatacaaagaaattgaggtt
gcaagtgttgattcatttcaaggaagggaaaaggactacattattttgtcttgtgttagg
agcaacgaacatcagggcattggatttcttaatgatcctcggagattgaatgtagctcta
acccgtgctcgatatggtattgtcatcttgggaaaccctaaagttctaagtaagcagcct
ttgtggaatagcttattaactcactacaaggaacatgagtgcttggttgaaggacctttg
aataacttgaagcagagtatggttcaatttcaaaagcccaaaaagatttataacgatagg
aggcttttctttggtggtggacctggaattgtccttaatgataattttgggtctgttgcc
tcagctagcccaaatgctgatagaagaaactcccgtgccaggggatcttatatgccacct
gccccacccaatggtacccacaagcctggtgctcatcctgctgggtttccaatgcctcgg
gtccccattccaccatttcatggtgatccaccttctcaaccatatgctattccaactcgt
ggggctgtgcatgggccaattggagctgttcctcaagtccctcagccaggaagtcgaggt
tttggtgctgggcgcggcaatgctggtgcacctattggaagtcatctcccacaccagcaa
ggcactcagcaaggcattgggaacattggatctttcaatttttcttccctggagaatcca
aatagccagccatctgtgggtagtgcattatctcagcctggatataataatattccagtt
cagggatcgagccaaacatttcgtgatggattttccatggggggtatgtcccaggagttc
ttgggtgatgatttcaaaagccagggatcgcatgttccttacaatgttgctgatttctcc
actcaggcatctcaaagtggatatgctgtggattatgttacgcaaggagcccaaggcggg
tttccaggcaacttcttgaatcagaattctcaagctggattttctcgttttggttctgga
aatgatttcatgtctcaggattacatggctcatggatcacaagggctgttcactcaggtt
ggctttaatgatccctcacaagatgatgcatcgcaaagccactttggcataaccaatccg
agccaacttcaatctcagggcttgatgaattccctttactctcagccctttgcccactac
aacactcagccggtgaacttacaggctccacaacagcagtctcagcagggtcagggcacc
caaaaccagaaaatccattacaacggttga
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