Populus nigra (Lombardy poplar): 133674429
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Entry
133674429 CDS
T10372
Name
(RefSeq) trans-Golgi network-localized SYP41-interacting protein 1 isoform X1
Organism
pnz Populus nigra (Lombardy poplar)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
TMEM191C
Motif
Other DBs
NCBI-GeneID:
133674429
NCBI-ProteinID:
XP_061951504
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All DBs
Position
15:621690..632814
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AA seq
2808 aa
AA seq
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MDKNKSRTDLLAAGRKKLQQFRQKKDSKGSSSSHGRSSKKSSTSEKHESDADEVSSTGKA
AGLKQVHEWEVKSQSDPDSGRVDSLVSSSSGAPHLDLDVVAVDLPSIPLTPETRVAETAL
DHDAGGAAEEGGADENLIDSSKPDEGESSQSIDDKAARVVPLGSSDIPDSEAKTKHDDAF
VSVDVSAPHKLIDIMDGTTVTGETESQDGEDSMWPLPPQEDTPDTSSIQARGNQVTDEAD
GLDSKHFGGSSDLELEGDRRLSFSGRGEIAKCAGETASEQIHVEEAAASQSKQSDGVDDA
SVSARATDMSDGLVASTLAISEADGSAGVIHEATNQHGKVVDIGPSTVENVEIPSGYGYC
GNDGESVQSDRLVTEASSPQYFPEDSFVFVAESDQRPLLNKLASTSDGYAMSPLGDLGEI
TFLQLIEVIKGLNEDEYRLLLESRGSVSNVELGTTNSFSSQNGFPGLLERLREELFLTKC
TKDILQLQLSEQSDLQIENDHHLHQLDDEISVLHASLKEARERGNSLAEELAECRSELQA
SFSGREELEQQFHEAKVEVEEVSARAYKLQNSLEMSQSELLRLSKELVNSQDFVAALQVE
VENLNGNLASLTEERKIVEEGKNSCLHENEKLLNELADCKSLIAALQTESSNLRGTVASM
TDEKIKLNGEKEYLADCHDKICLELSDCKGLVEALQVENLKLSGSLAMATEERKKLEEDM
SYSAQERDRLSSELLVLHDELSKDHAECLQFESELKEMTTRLEQLTEENIFLSSNLDTHK
VKLQEIEDLQAQKSSPVGKAANPVGSLETQSKVWENASDVEHDGEATFSMSEKSMSGNFE
VAPPLALLGQEVFDDSLGFVALKGHLEEAGKVLQGLEKEIEVVHSHSVSLTRAGGKSASP
AVSKLIQAFESKGQHDENEAEDGSMKEDQSPATDPFASMKEYTGNLKAILKRLTLDAENA
SLMFKTERDDINIANCTIRELKFQAEALKEHNDNLEATNIQLGVLYEAVKQHLSDFNEKN
NKLEVLCDSLRQQEFSLKAENSEFGRKLSDCELKIEDLQSQLHGLQKSSDEKASVLHDEL
AKSQMEAAERALTVEQEWNSTVAQIIEAVDRLDVSTGFSLTSTASMPSHGSLDVSSHVTS
SVNAATNTIQDLKEKLEASSRDHETASNLFNGVSEKCNELLGKSELVNATLHKLYSELRK
IVIDSCGYVEESNLQDEELPDTVDYIRFKALLEKLENALAERLQLQSANKKLNSELMSQI
KDIEELNRRCHDFSSIQRLIEDVEGEVKLEDGGADSEMTPVSHLESLVSFLVHKYKEAKE
QVNSSREEFGSKVLEMTELQKEIHQLTGLTLQHENEILVLKEHLTQAEEALVAMRSEWQE
KVSELQQSEQRVSSIREKLSIAVAKGKGLVVQRDSLKHSLAETSGELDRCSQELQLKDSR
LHEIEAKLKTYSEAGGRVEALESELSYIRNSATALRESFLQKDSVLQRIEEILEDLDLPE
HFHSRDIIEKVDWLARSATANTLLPTDWDQKSSVGGSHSDTGFVVTDTWKEDVQSGSNSG
DDLRRKYEELQSKFYGLAEQNEMLEQSLMERNNLVQRWEERLARINLPSHLRLAEPEDRI
EWLENALSEASHDRNSLLQKIDELENYCRSVTADLEESQDRVSHLIVELQESSKRVSDLE
RDLQAVILERENLFERLEILTSDVEKLSARTVQFELDNGKLQNEASALQEKLVDKLGIEE
RIQSINDEISRMQDLVCDALQDPGAKDFISDGSSTECLERLLRKLVENYVTLSSAKSVPV
EAVVDHHAKGTDANFIEGQTRDTLDSEESDAALLKRDAWGNEEENGDSLKKELEETLSEL
ACVKEERDRDREKQQSLICEVEAKEKKILELQELLHQEEQKSTSVREKLNVAVRKGKLLV
QQRDSLKQTIEEMNAELVLLKSQIKDRENALADNEQKMRDLATYPERVEALEADGSLLRN
HLAETEHLLQEKGHTLTMMLNVLGDVDVGAQIYSNDPIEKLEYMGKLCRDLHAAVASAEQ
ESKKSGRAAELLLAELNEVQDRNDSLQEELAKASIEISEISKERDTAEAAKLEALSCLER
SFTVHAQEKRKQYSELAVLKSTADKLRKSFSDINDLLGGVFTMELEFLQNVEAGMASCVK
RTETNLAVHVPPFSRADGITFNISENMDNLSVEFSSQSSMPDDFDDNFIIEVCNTVQELM
KEIGAVKVILGEHSGALHNQARNLSKLIGILHREMISQKESFEALERENKHIKSAEKEKE
KEIVVLLRNISLLYEACTSSIMEIENRKAEVSGNALATGDMAVNWKPARFADGGDHNFPS
EEHFKTMAERLSVAVKEFFSIKGDITEGEKKEMKVMISNLQKELQEKDIQRERICMELVS
QIKEAESAVTSYSLDLQSSRTRIYDLEKQVDVMEEERELLKQRVKELQDGQAISADLQER
VRSLTDVLAAKEQEIETLMQALDEEEVQMEDLTSKTKELEKILQQKNLDIENLEASRGKA
LKKLSITVNKFDELHHFSESLLAEVEKLQSQLQERDAEISFLRQEVTRCTNEVLVASQMS
SKRNSDDIHELLLWLDTLVSQVGMQDVNLYDSSMAPEHKELLQKKITSIVSKLEDLQLVA
QSRDTLVQTERNKVDELTRRIETLESSLREKESQLNMLEGVEDLGQTTNSVSEIVEVKPV
INKWVAPVPSSSSQVRNLRKVNNDQVAIAIDEDPVGKNNLEDEDDDKVHGFKSLTTSRIV
PKFTRPVSDMIDGLWVSCDRALMRRPALRLCIIIYWAVLHALLATFAV
NT seq
8427 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaacaagagccgtaccgatctgctcgccgccggtcgtaaaaagcttcagcaa
tttcgccagaagaaggacagtaaaggcagtagtagtagccatggaagatcctcgaaaaag
tctagcacgtcggagaagcatgaatctgacgctgatgaagtgtcgagtactggaaaagca
gcaggattgaaacaggttcatgaatgggaagttaaatctcagagtgatcctgattcggga
agggtagattctttggtgtcttcatcttctggggctcctcatcttgatcttgatgttgtg
gctgttgatctgccttcaattcctctgacacctgaaacaagagtagccgaaacagctttg
gatcatgatgctggcggtgctgcggaggaaggtggggctgatgagaatcttattgattcc
tcaaaacctgatgaaggggaaagtagccagtctattgatgataaggctgcaagagttgtt
cctttaggaagctcagatattccagattctgaagcaaaaaccaaacatgatgatgcattt
gtaagcgtggatgtgtcagcccctcataaattaattgatattatggatggcacaaccgtt
acaggtgaaacagagagccaagatggggaagacagcatgtggccattgccaccacaagaa
gatacccctgatacatcctcgatacaagcaaggggaaatcaggtaacggatgaagctgat
ggtttggactcaaagcattttggtggaagcagtgatttagagcttgaaggagacaggagg
ctttctttctctgggcgtggtgaaattgccaaatgtgctggagagacagcttcagaacag
atccacgtggaggaagcagcagcttctcaatcaaagcaaagtgatggggtagatgatgct
tctgtttctgcaagagcaactgacatgtcagatgggctagtggcatctactttggctatt
tcggaggctgatggaagtgcaggtgttatccatgaagccacgaatcaacatgggaaagtt
gttgatataggtccttctactgtagaaaatgtggaaattccatctgggtatggatattgt
ggaaatgatggggaaagtgttcaatctgataggttggttacagaagcatctagtccacaa
tattttcccgaggattcttttgtgtttgttgctgaaagtgaccaaaggcctcttttaaat
aaactggcaagtacatctgatggatatgctatgtctcctcttggtgatttgggcgaaatc
actttcttgcagctgatagaggtgataaagggacttaatgaagacgagtataggttactg
ctcgagtctcggggatcagtttctaatgttgagttggggactaccaattcgttctcatca
caaaatggctttccgggtttgttggagagacttagagaagaattgttcctcacaaagtgc
acgaaagatatccttcaattgcaactttctgaacagtctgatctacaaatagagaatgat
caccatttgcatcaattggatgatgaaatatctgtgcttcatgcatcactcaaagaagct
cgtgagaggggtaactcccttgctgaagagcttgcagaatgcagatctgaacttcaggct
agttttagtgggagggaggagcttgagcagcaatttcacgaagcaaaggtggaagtcgag
gaagtttctgctagagcatacaagttgcagaatagtctggagatgtctcaatcagaatta
ttgagactatccaaggaattggtcaacagccaggattttgttgcagccttgcaggtggaa
gttgaaaacttaaatggcaatcttgcttccttgaccgaggagagaaagatagtcgaggag
ggaaaaaattcttgtctccatgagaatgagaagctgttgaatgaattagctgactgcaag
agtttgatagcagctttgcagacggaaagttccaacttgaggggaactgttgcttcaatg
acagatgagaaaatcaagctcaatggggaaaaggagtaccttgctgattgtcatgataag
atttgcctggagttatctgattgtaagggtttggtggaagctctacaagtggaaaatctg
aaattaagtgggagccttgccatggctacagaagagagaaagaaacttgaagaggacatg
agttattcagcccaggagagagatagactttcatctgagcttcttgtccttcatgatgag
ttatctaaagatcatgcagaatgcttgcagtttgaatctgagctaaaagagatgacaacg
cgtcttgaacaacttacggaggaaaatatatttcttagcagcaatctggatacacataaa
gttaagctacaagaaattgaagacttgcaagcccaaaagtcatccccggttggcaaagct
gcgaatccagttggaagtttggaaacacagagcaaggtttgggagaatgcatctgatgtt
gagcatgatggtgaagctaccttttcaatgtctgagaaatccatgtctggtaactttgaa
gtagctccgccactagcactgttggggcaggaagtctttgatgattccttgggttttgta
gccttgaagggacaccttgaggaggcaggaaaagttttgcaaggtcttgaaaaggaaatt
gaagtggtgcactctcattcagtatcactaactagagctggtggtaaaagtgcatctcct
gcagtgtcaaaactaattcaagcttttgagtcaaaggggcaacacgatgagaatgaggca
gaggatggttccatgaaagaggatcaatcaccagcaacagatccttttgcttcaatgaaa
gaatacacaggaaatttgaaggcaatccttaagcgattaactctagatgctgagaatgcc
agtttaatgttcaagacggagagagatgatataaacattgctaattgcactatcagggag
ctcaagtttcaggctgaagccctgaaggaacacaatgataatttggaagcaaccaacatc
caacttggtgttctttatgaagcggtaaagcaacatttgtctgattttaatgaaaaaaac
aacaagcttgaagttctttgtgattccctgagacaacaagaattcagtcttaaagcagaa
aattctgagtttggcagaaaactgagtgactgcgaattgaaaattgaagatttgcagagt
cagttgcatggtttacagaaaagttcagatgagaaggcttccgtacttcatgatgaacta
gcaaaatcccaaatggaagcagctgagagggcattgacagttgagcaggaatggaattca
accgttgcccagattattgaagcagttgataggctagatgtctctactgggttttcgctc
acctccaccgcctcaatgcccagtcatggttccttggatgtaagtagtcatgttacttcc
tctgttaatgctgctacaaatacgatacaggatctgaaggagaaacttgaagcttcttcc
agagaccatgaaactgcctctaacttattcaatggagtgagtgagaagtgcaatgagttg
cttggaaaaagtgagttggttaatgccactttgcataagctgtactctgagcttagaaaa
attgtgattgattcatgtggttatgtggaagaaagtaatttacaagatgaggaattgcct
gacactgtagattatattagattcaaagcccttttggagaaattggagaatgctctggct
gagaggctacaacttcagtctgcaaacaagaaacttaactctgagttgatgagtcaaata
aaagatattgaggaactgaacagaaggtgccatgattttagttccattcaaaggctaatt
gaagatgttgagggtgaagtgaaacttgaagatggtggggcagactcagagatgacacct
gtttcccatctggagtcattggtgtctttccttgtgcacaaatacaaggaggctaaggag
caggttaactcatctagagaagagtttggttctaaggtactggaaatgacagaactgcag
aaggagatacatcagttaactgggttgacgcttcagcatgagaatgaaatccttgtactt
aaggagcatttgacccaggctgaggaagctcttgttgctatgcgatctgaatggcaggag
aaagtaagtgaacttcaacagtcagagcagagggtatcatccattagagagaagcttagc
atagctgttgccaaggggaaggggctggttgtgcagcgtgacagtctcaagcattccctg
gcagagacatctggtgaattggacagatgctcacaggagttacagctgaaagattccagg
ctgcatgaaattgaagcaaaactgaagacctattcagaggctggtggtcgcgtggaagct
ctggaatctgaactttcatacatccgcaactcagctactgcactgagagaatcttttctt
caaaaagactcggtactccagaggatagaggagattttagaagatctggatctgccagag
catttccattcaagagatataatcgaaaaggttgattggttagcaagatcagcaactgca
aacactttactgcctacagattgggaccaaaaaagttcagttgggggttcacattctgat
actggttttgttgtcacagatacctggaaagaggatgtacagtctggctcaaattcaggg
gatgatttgagaagaaaatatgaggagcttcaaagtaagttttatggcttggctgaacaa
aatgaaatgctggaacaatccttgatggaaaggaacaacttggttcagagatgggaagaa
cgtttagctaggatcaatttgccttcccacttgcggttggccgagccagaggatcggatt
gagtggttagaaaatgcactttcagaggctagccatgatagaaattctctgctgcagaag
attgatgaacttgaaaattattgcagatcagttactgcagatttggaagagtcacaagat
agagtatctcacctaattgttgagttgcaggagtcatcaaagagagtatctgaccttgag
agagaccttcaagcagttatccttgagagagagaacctttttgaaagattggagattctg
acttctgatgttgagaaactttcagcaaggacagtccaatttgaactagacaatggaaaa
ctgcagaatgaagcatctgctttgcaggagaaattggttgacaagcttgggattgaggag
cgtattcagagcattaatgatgagataagtaggatgcaggatttggtttgtgatgcgttg
caggatcctggtgcaaaagattttatatctgatggcagcagtacagagtgtctggaaaga
ttactgaggaagcttgtagagaactacgtaacactttcttctgcaaaatctgtgcctgtt
gaggcagttgtagatcaccatgctaaaggaactgatgccaattttattgaaggccaaact
agagatacattggattctgaggaatctgatgcagctcttctgaagagagatgcatggggt
aatgaggaagaaaatggggattctctgaaaaaagaactggaagagactttgagtgaactg
gcatgtgtgaaggaggaaagagacagagacagagagaagcagcagtctttgatttgtgaa
gttgaagcaaaggagaaaaagatattggagttacaagagctactgcatcaggaggaacag
aagtctacttctgtgagagagaagctgaacgttgctgttagaaaagggaagttattggta
caacagcgtgatagtctgaaacaaaccattgaagagatgaatgcggagttggtgctcttg
aaatctcagattaaggacagggaaaatgctcttgcagacaatgaacagaagatgagagac
ttggccacttaccctgaaagggtggaagcccttgaagctgatggttcactcttgagaaat
catttggctgaaactgagcaccttctgcaggagaaagggcatactttaacaatgatgttg
aatgttctcggagacgtcgatgttggtgctcaaatttacagcaatgatccaattgagaag
ttggaatacatggggaaactatgccgtgatttgcatgctgctgtggcttcagccgaacaa
gaatctaaaaaatctggaagagcggcagaactgctgcttgctgaattaaatgaagtccaa
gacaggaatgatagtctacaagaggagcttgctaaagccagtattgaaatttcagagatc
tccaaggagagggatacagcggaggctgctaaactggaagctctttcatgtctggaaagg
tcattcacagttcatgcacaggagaaaaggaaacaatattcagagcttgcagtgttaaaa
tctacggcagacaaactcaggaaaagcttctctgatatcaatgatctactgggtggtgtt
ttcaccatggaactggaatttctgcaaaatgtagaggctggtatggcatcatgtgttaaa
agaacagaaactaatcttgcagttcatgttccaccttttagcagggctgatggcattact
ttcaacatttcagaaaacatggacaacttatctgtggagttttcatcacaatccagcatg
ccagatgattttgatgataattttattattgaagtttgtaatactgtgcaagaattaatg
aaagaaattggtgcagttaaagtaatattaggcgaacattctggtgcattacataaccaa
gccagaaatctatcaaaattgatcgggatccttcacagagaaatgatttcccaaaaagag
tcatttgaggccttggaaagagaaaataagcatataaaatcagcagaaaaggaaaaggaa
aaggaaattgttgtattgctcagaaacattagtttgctttatgaagcatgcaccagttct
atcatggaaattgaaaatagaaaagctgaagtatcaggaaatgctttggctactggtgac
atggcagtgaactggaaacctgcaagattcgctgatggtggtgaccataattttccatct
gaggagcatttcaagaccatggcagaaagattgtccgtggcagtcaaggaattttttagt
ataaaaggtgacatcacagagggtgaaaagaaagaaatgaaagttatgatatcaaatttg
cagaaagagcttcaggagaaggacattcaaagagagaggatttgcatggagctagttagt
caaattaaggaagcagaatcagctgtaacaagctactcgctagatctgcaatcttcaaga
actcgcatctatgatttggagaaacaggtagatgtgatggaagaggagcgggaattattg
aagcagagagtaaaggaacttcaagatgggcaagccatatcagcagatttacaggagagg
gtcagatcgctgaccgatgtgcttgctgcaaaagagcaagaaattgaaaccctgatgcaa
gctcttgatgaggaagaggtccagatggaagatttaactagcaaaacaaaagaactggaa
aagattttgcagcaaaagaatttggacattgagaaccttgaagcttctcgtggaaaggct
ctgaaaaagctttccatcactgtgaacaagtttgatgagctccatcatttttccgaaagt
ctccttgctgaggttgaaaaacttcaatcacaattgcaagagcgtgatgctgaaatatct
ttcttaaggcaagaggtcactaggtgcaccaatgaagttctggttgcatctcagatgagc
agcaagagaaattcagacgacatccatgaattgttgttgtggttggacacattggtttct
caagtcgggatgcaagatgttaatctttatgatagcagtatggcacctgagcacaaggaa
ttgcttcagaagaagattacgagcattgtgtctaaattggaggatctacagctggtggct
caaagcagggacacattagtgcaaacagaaaggaataaagtagatgagttaacacgtcga
atagaaactcttgagagctctttacgtgagaaagaatcccaattaaatatgcttgaaggg
gttgaagatttgggacagacaaccaactcagtctcagaaattgtggaagtcaaaccagtg
atcaacaaatgggtagcccctgtgccctccagttcatctcaagttcgcaatttgcgcaaa
gtcaacaatgatcaagttgctattgctatagatgaggatcctgttggcaagaataattta
gaggatgaagatgatgataaagttcatggtttcaagtcgcttactacatcgagaattgta
ccgaagtttacaagacctgtgtctgacatgatagatggtctatgggtttcttgtgaccgg
gcattaatgcgtcggcctgccctacgtctttgtataattatctactgggctgtcttgcat
gcacttcttgcaacttttgcggtttag
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integrated database retrieval system
