Populus nigra (Lombardy poplar): 133674456
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Entry
133674456 CDS
T10372
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03013
Nucleocytoplasmic transport
pnz03015
mRNA surveillance pathway
pnz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133674456
09122 Translation
03013 Nucleocytoplasmic transport
133674456
03015 mRNA surveillance pathway
133674456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133674456
03041 Spliceosome [BR:
pnz03041
]
133674456
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
133674456
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133674456
Spliceosome [BR:
pnz03041
]
Complex C
Other components
EJC/TREX
133674456
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
133674456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
YihI
Motif
Other DBs
NCBI-GeneID:
133674456
NCBI-ProteinID:
XP_061951547
LinkDB
All DBs
Position
15:2012735..2017882
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AA seq
428 aa
AA seq
DB search
MGETRDNDAYEEELLDYEEEDDKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLR
SIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPTTGQVIALV
LCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaacaagagacaacgatgcttacgaggaggagcttctcgactacgaagaagaa
gatgacaaagcacctgactccgtcggagctaaagttaacggcgaagccgttaagaaggga
tatgttggaattcacagttcgggattcagagacttccttttgaagccagagcttcttcgg
tccattgttgactcgggttttgagcatccttctgaagtgcaacatgaatgtattccccaa
gccatcttgggaatggatgtcatctgccaagctaaatctggaatgggaaagactgctgtt
tttgttctgtctactcttcagcaaattgagcctaccactggacaagttattgcccttgtt
ctatgtcacactagagagttggcttaccagatctgtcatgagtttgagaggttcagtact
tacttgcccgatacaaaggttgctgttttctatggtggtgtcaatgtcaaaactcacaaa
gatctactgaaaaatgaatgccctcatgttgttgttggaactcctggaagaatcctggca
ctggctagagataaagacctttccttgaagaatgtcaggcattttatccttgatgaatgt
gacaaaatgctggaatcactcgacatgaggagagatgttcaggagatcttcaagatgact
cctcatgataagcaagttatgatgttttctgcaacactcagcaaagaaatccgcccagtt
tgcaaaaaattcatgcaagatccaatggaaatttacgtcgatgatgaagccaagttgacc
ctccatggtcttgtacagcactacatcaaactgactgagctggagaaaaatcggaagttg
aacgatcttcttgatgcattggacttcaatcaagttgttatctttgttaaaagtgtgagc
agagcagctgagttgaacaagttacttgtggagtgtaatttcccctctatttgcatccat
tctggcatgtcacaggaagaaaggttgatgcgctacaagggtttcaaggagggtcataaa
aggattcttgttgccactgatttggttggcaggggtattgatattgaacgtgtcaacatt
gttattaactatgacatgccagactctgctgacacttacttgcacagggttggtagagct
ggtaggtttggcacaaagggccttgcaattacctttgtatcatcagcttccgactctgat
gttctcaaccaggttcaagagaggtttgaggtggatataaaggagctaccggagcagatt
gatacatctacatatatgccatcttaa
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