Populus nigra (Lombardy poplar): 133674666
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Entry
133674666 CDS
T10372
Name
(RefSeq) putative CCR4-associated factor 1 homolog 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133674666
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133674666
Messenger RNA biogenesis [BR:
pnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133674666
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
133674666
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
133674666
NCBI-ProteinID:
XP_061951861
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All DBs
Position
15:2723553..2724470
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AA seq
305 aa
AA seq
DB search
MAAGVGAAAKITAVWRQNFQREIFRLDAALFRFPVVSFDTEFPGFFRNTPIDATDLTRYE
DLRHNVDPLRLIQFGITVADASGKIGGTWEFNLRFDLSKDLFVSQSIQFLQDNGIDFDKL
RRDGIDFDMFAQLLSRVVAKHRNLCWVTFHGLYDLSHTLRTVTNRPLPHSLAGFTSLLGI
VFGDVVDIKYKARFCQGLRGGELGLAAIAKILNVERVGGAHQAGSDSLLTARVYTKMRMV
YKIDETLCMGCLYGISARICKPIAVPNTNGRCFIPYFSTPAPFQRCIPPHCYGFMQAAPP
FSHVL
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggctgctggtgttggtgctgccgccaaaatcactgcggtgtggagacaaaattttcag
cgagagattttcagattggacgctgccctgttcagatttccagttgtctcttttgataca
gagtttcctggtttctttcgaaacactccgatagacgccactgacttgactcgttacgag
gatttgaggcataatgttgatccattaaggttaatccaatttggtatcaccgttgcagat
gcaagtggcaaaatcgggggcacttgggagttcaatttgcggttcgatttgtcaaaggat
ttgtttgtctctcagtctatacagttcttgcaagacaatggcatcgattttgacaagctg
agaagagatgggattgatttcgacatgttcgcacagttgttgtcacgtgttgttgccaag
catcgaaacctttgttgggttaccttccatggcttgtatgatctgtcacacacattgagg
acagtgacaaacaggccattgccccattctttggctggttttacgtctctacttggtatt
gtgttcggtgacgtggtggatatcaaatacaaggcacgcttttgccagggattacgtggt
ggtgagttagggttggcagccattgctaaaatcttgaacgtggaaagagttggtggggca
catcaagcaggatctgattctttgttgacggctcgtgtgtacacaaagatgaggatggta
tacaaaattgatgagactctttgcatgggctgcttgtatggcatctcagctagaatttgc
aagccgattgctgtgcctaataccaatgggcgctgctttattccatacttcagcactcca
gcaccgttccagcgttgcattcctccccattgttatggtttcatgcaagctgctccacct
tttagtcatgtcctgtag
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