Populus nigra (Lombardy poplar): 133674726
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Entry
133674726 CDS
T10372
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03030
DNA replication
pnz03420
Nucleotide excision repair
pnz03430
Mismatch repair
pnz03440
Homologous recombination
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133674726
03420 Nucleotide excision repair
133674726
03430 Mismatch repair
133674726
03440 Homologous recombination
133674726
03460 Fanconi anemia pathway
133674726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133674726
03032 DNA replication proteins [BR:
pnz03032
]
133674726
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133674726
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133674726
DNA replication proteins [BR:
pnz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133674726
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133674726
MMR (mismatch excision repair)
133674726
DSBR (double strand breaks repair)
HR (homologous recombination)
133674726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-like
Motif
Other DBs
NCBI-GeneID:
133674726
NCBI-ProteinID:
XP_061951917
LinkDB
All DBs
Position
15:complement(7479272..7482176)
Genome browser
AA seq
670 aa
AA seq
DB search
MPVNLTPNAIAMINGGDVNLKPLVQVLDIKQMGSAQERFRLLVSDSVLTQHAMLGTQLND
RVKTGLVKKGSVIQLIDYICSQVQKRKIIVVLNLETIIPDCEIIGNPKMVSDAPAQKALL
NTDSMQSSTVDYNNPNSQSHGSNMHSIRPALSSQNHGGNMQSFRPTSSTQNQGSKMRSFQ
PALGAQNYGNDVQSFRPTVQPPYQPPPSYRNHGAVMKNEAPARIIPINALNPYQGRWAIK
ARITAKGDLRRYNNARGDGKVFSFDLLDFDGGEIRVTCFNAVVDRFYDVVEVGKVYLISK
GSLKPAQKNFNHLKNDWEIFLEATSTVDLCPEEDGSIPQQQFSFKPISEIEIAENNSIFD
VIGVVISVNPSVPILRKNGMETQRRILNLKDGSGWTVELTLWGDFCNKEGQKLQEMVDSG
FFPILAVKAGKVSDFNGKSLGTISSTQLFINPDIPEAHAVKDWFDRGGRDVASMSISKDI
AQGGPKNEVRKTVSQVKLEGLGRSDKPDWATVRASVSFIKTDTFCYTACPLMIGDRQCNK
KVTRSGNSRWQCDRCNQEFDDCDYRYLLQVQIQDHTGLTWATAFQESGEEILGYPAKELY
LLKYESNDDTRFADIIRSRLFYQYLFRLKIKEEMYGDERRVKITIFKADKVSYSSESRFM
LDLISNVRTY
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaatctgacgccgaatgcaattgcgatgataaacggcggcgatgtgaacttg
aagccgctagttcaggttttggatataaaacagatgggaagcgcacaggagaggttcagg
ctcctcgtctctgattccgttttgactcagcacgccatgctcggtactcagctcaatgac
cgagtcaagactggccttgtcaagaaaggatctgtcattcaattgatcgattacatttgc
agccaagttcaaaagcgcaagattattgttgtgctcaacttggaaactataataccagac
tgtgaaataattggaaatccaaaaatggtctctgatgctcctgctcagaaggcattgctt
aataccgactcaatgcagtcatcaacggttgattataacaatccgaattctcaaagtcat
ggaagtaatatgcacagcatcaggcctgctttgagcagccaaaatcatggtggaaatatg
caaagtttccggcccacttcaagtactcaaaatcagggcagtaaaatgaggagtttccag
cctgctttgggtgcccaaaattatggtaatgatgtgcagagttttcgaccgacagttcaa
cctccgtaccaaccccctccaagttacagaaatcatggtgcagttatgaagaatgaggca
ccagcacggataattcctattaatgctttgaatccttaccagggacgctgggctatcaaa
gccagaataactgctaaaggggatcttcgccgctataataatgctcggggggatgggaag
gtcttttcctttgatcttcttgattttgatggaggtgaaatacgagtgacctgcttcaat
gctgttgttgaccgcttctacgatgttgttgaagttggtaaggtttatctgatttcaaag
ggtagcttaaaacctgctcagaagaatttcaaccacctgaagaatgactgggagatattt
ttggaggcaacttcaactgtggatctttgccctgaagaagatggttctataccacaacag
caattctccttcaaacccattagtgaaattgagattgctgagaacaattccatatttgat
gtaattggtgttgtgatatccgttaacccttcagttcctatattgagaaagaatggtatg
gaaactcaaagaagaattctgaatctgaaggatggttctggttggacagttgagctaacc
ctttggggagatttctgcaacaaggaaggtcaaaagctgcaagagatggttgattctggg
ttttttcccattttagctgtcaaagctgggaaggttagtgacttcaatggaaaatctctg
ggaacaatttcttctactcagctctttataaatccagatattcctgaggctcatgctgtg
aaagactggtttgatcgagggggccgtgatgttgcttctatgtctatttccaaagacatt
gcgcaaggaggacccaagaacgaggttcgcaaaactgtgtcccaggtcaagcttgaaggt
cttggaagatcagataagcctgattgggccactgtgagggcaagcgtaagttttatcaaa
acagatacattctgttacacagcctgccctttgatgattggagatagacagtgtaacaag
aaagtgacgagatccggaaactcaagatggcaatgcgatagatgcaatcaagaatttgac
gactgtgattataggtatcttcttcaagttcagattcaggaccacacaggattgacttgg
gcaacagcattccaggagtctggggaggagatattgggttacccagcaaaggaattgtac
ttgttgaagtatgaatccaatgatgataccagatttgcagacataatcaggagccgactc
ttttaccagtatcttttcaggcttaagatcaaagaggaaatgtatggggatgaacgaagg
gtgaagataacaatttttaaggctgacaaggtaagctattcttcagaaagcagattcatg
cttgatttgatttccaacgttcgtacatattga
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