KEGG   Populus nigra (Lombardy poplar): 133674797
Entry
133674797         CDS       T10372                                 
Name
(RefSeq) autophagy-related protein 18b
  KO
K17908  autophagy-related protein 18
Organism
pnz  Populus nigra (Lombardy poplar)
Pathway
pnz04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:pnz00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    133674797
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pnz04131]
    133674797
   03029 Mitochondrial biogenesis [BR:pnz03029]
    133674797
Membrane trafficking [BR:pnz04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    133674797
Mitochondrial biogenesis [BR:pnz03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    133674797
SSDB
Motif
Pfam: PROPPIN WD40_WDHD1_1st Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_Vps41 WD40_CDC20-Fz Beta-prop_EML_2 BCAS3_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR90_POC16_2nd WD40 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd
Other DBs
NCBI-GeneID: 133674797
NCBI-ProteinID: XP_061952031
LinkDB
Position
15:complement(11625036..11630558)
AA seq 378 aa
MSSGSQSSSSSSSSQILCASFNQDNSGFAISTRDGFKIFDSNTGRLCYERASGAFVVVEM
LYSSSLLAIVGGGEQPSLSPRRLCLFNTTTGTALRELNFLTSVLAVRLNKKRLVVVLQEK
TYIYDSNTLAILDAIDTVPNVKGLCAFSPSLDGCFLALPSSTTKGSVLVYNVMELHSHCE
IDAHRSPLAAIVMSFNGMYIATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSLSFGP
STQLPEILVALSSSGSIHVFSLGLAINQRGRRSSSFLGSLLPDSVNDAFDPAHHRVLHNA
VPAGVKSNVVVRKVDKIADTSLSESVASRATLSVITFNGHFLEYTVDVNTQNESKWSLES
EFNLLAVISGEEQHFQLV
NT seq 1137 nt   +upstreamnt  +downstreamnt
atgagtagcggtagtcagtcctcctcctcctcctcctcctcacaaatcctctgcgcttct
tttaatcaagacaacagtggctttgcgataagcaccagagatggtttcaagatcttcgat
tctaatacgggacgtctctgttatgaacgagcttctggagcttttgttgttgtggaaatg
ctatatagttcaagcctccttgccattgttggcggcggtgaacagccatctctatctccc
cggcgactctgtttgttcaatactacaacaggaactgctcttcgcgaattgaatttctta
acttcagtcctcgccgtccgattgaataaaaagaggcttgttgttgttttgcaagaaaag
acttatatctatgattcaaatacgctggcaatattggatgccatcgatacagttcctaat
gtaaaaggactttgtgcattctctcctagtttggatggctgcttcttggctcttccttct
agcacgaccaaaggatctgttttggtgtacaatgtcatggagcttcattcacattgcgag
atagatgctcaccgttcgccattggctgcaattgtcatgtctttcaatgggatgtacatt
gcaacagcatctgagcaggggaccataatcagagttcatctggtatcagaagcaaccaag
tcatatagttttcgaagggggacatacccatcaacaatattttccttgtcatttggacca
tcaacgcaacttccagaaattcttgtagccctgagtagttcaggttccattcatgtcttc
tcactgggtcttgccataaatcagagaggcagaagatcaagcagttttcttggatcatta
ttacctgattctgtaaatgatgcattcgatccagctcatcaccgtgtgcttcataatgct
gttcctgctggagttaaaagcaatgtggtcgtgcgcaaggtagacaagattgctgacaca
agtttatctgaatctgtagcttctagggccacgctatcagtaataacctttaatgggcat
tttttagagtacactgtagatgttaacactcaaaatgaatctaaatggagcttggagagt
gaatttaatctcttggcagtgatatcaggtgaagagcaacattttcagctcgtatga

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