Populus nigra (Lombardy poplar): 133674797
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Entry
133674797 CDS
T10372
Name
(RefSeq) autophagy-related protein 18b
KO
K17908
autophagy-related protein 18
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
133674797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pnz04131
]
133674797
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133674797
Membrane trafficking [BR:
pnz04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
133674797
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
133674797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_Vps41
WD40_CDC20-Fz
Beta-prop_EML_2
BCAS3_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
WD40
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
133674797
NCBI-ProteinID:
XP_061952031
LinkDB
All DBs
Position
15:complement(11625036..11630558)
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AA seq
378 aa
AA seq
DB search
MSSGSQSSSSSSSSQILCASFNQDNSGFAISTRDGFKIFDSNTGRLCYERASGAFVVVEM
LYSSSLLAIVGGGEQPSLSPRRLCLFNTTTGTALRELNFLTSVLAVRLNKKRLVVVLQEK
TYIYDSNTLAILDAIDTVPNVKGLCAFSPSLDGCFLALPSSTTKGSVLVYNVMELHSHCE
IDAHRSPLAAIVMSFNGMYIATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSLSFGP
STQLPEILVALSSSGSIHVFSLGLAINQRGRRSSSFLGSLLPDSVNDAFDPAHHRVLHNA
VPAGVKSNVVVRKVDKIADTSLSESVASRATLSVITFNGHFLEYTVDVNTQNESKWSLES
EFNLLAVISGEEQHFQLV
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcggtagtcagtcctcctcctcctcctcctcctcacaaatcctctgcgcttct
tttaatcaagacaacagtggctttgcgataagcaccagagatggtttcaagatcttcgat
tctaatacgggacgtctctgttatgaacgagcttctggagcttttgttgttgtggaaatg
ctatatagttcaagcctccttgccattgttggcggcggtgaacagccatctctatctccc
cggcgactctgtttgttcaatactacaacaggaactgctcttcgcgaattgaatttctta
acttcagtcctcgccgtccgattgaataaaaagaggcttgttgttgttttgcaagaaaag
acttatatctatgattcaaatacgctggcaatattggatgccatcgatacagttcctaat
gtaaaaggactttgtgcattctctcctagtttggatggctgcttcttggctcttccttct
agcacgaccaaaggatctgttttggtgtacaatgtcatggagcttcattcacattgcgag
atagatgctcaccgttcgccattggctgcaattgtcatgtctttcaatgggatgtacatt
gcaacagcatctgagcaggggaccataatcagagttcatctggtatcagaagcaaccaag
tcatatagttttcgaagggggacatacccatcaacaatattttccttgtcatttggacca
tcaacgcaacttccagaaattcttgtagccctgagtagttcaggttccattcatgtcttc
tcactgggtcttgccataaatcagagaggcagaagatcaagcagttttcttggatcatta
ttacctgattctgtaaatgatgcattcgatccagctcatcaccgtgtgcttcataatgct
gttcctgctggagttaaaagcaatgtggtcgtgcgcaaggtagacaagattgctgacaca
agtttatctgaatctgtagcttctagggccacgctatcagtaataacctttaatgggcat
tttttagagtacactgtagatgttaacactcaaaatgaatctaaatggagcttggagagt
gaatttaatctcttggcagtgatatcaggtgaagagcaacattttcagctcgtatga
DBGET
integrated database retrieval system