Populus nigra (Lombardy poplar): 133675417
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Entry
133675417 CDS
T10372
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03030
DNA replication
pnz03420
Nucleotide excision repair
pnz03430
Mismatch repair
pnz03440
Homologous recombination
pnz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
133675417
03420 Nucleotide excision repair
133675417
03430 Mismatch repair
133675417
03440 Homologous recombination
133675417
03460 Fanconi anemia pathway
133675417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pnz03000
]
133675417
03032 DNA replication proteins [BR:
pnz03032
]
133675417
03400 DNA repair and recombination proteins [BR:
pnz03400
]
133675417
Transcription factors [BR:
pnz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
133675417
DNA replication proteins [BR:
pnz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
133675417
DNA repair and recombination proteins [BR:
pnz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
133675417
MMR (mismatch excision repair)
133675417
DSBR (double strand breaks repair)
HR (homologous recombination)
133675417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
133675417
NCBI-ProteinID:
XP_061952769
LinkDB
All DBs
Position
16:7395842..7399317
Genome browser
AA seq
632 aa
AA seq
DB search
MNAAIGKSVSPDGISKMLSIPKPDSFTHLPEIILQVTNLEPKGKSYGFDASDGKMKIKAI
FSSRLSSEILSGNIQNLCLIRVLDYTVNEIPSKSEKFLIITKCEVASPALEKEIKEVVEQ
EESDMGMPLKKPKLENEVKSENIKEAKGLILKPKQEIVAKSAAQIVHEQHGNMAPAARMA
MTRRVHPLVSLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDGDGTQIQATMF
NEAAKKFYDRFELGKVYYISKGTLRVANKQFKTVQNDYEMTLNENSEVEEASDEAACIPE
TKFKFVPIDQLGPYVNSKDLVDVIGIVQSVSPTTSIRRKSNNETVPKRDIVVADETKKTV
VVSLWNELATSVGQELHDIADKSPVVAIKSLKVGDFQGISLSTLGKSIVQVNPVIAESEK
LRNWYDSEGKETSMASVGSGLSPSTKSGARSMYSDRVSLSHITSNPSLGEDKPAFFSIKA
YISFIKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDGSGEG
WVSAFNEEAEKIIGCSADELDLLKSQIGEENTYQQRLKEATWNLHLLRISVSQNEYNNEK
RQRMTVRAVAPVDFAAESRFLLEEISKMKGSQ
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcagcgataggaaaatcggtgagcccagatgggatatcaaaaatgctttcaatt
cctaaaccagattcatttactcatcttcctgaaatcatccttcaagtcacaaatcttgag
cctaaaggcaaatcttatgggtttgatgctagtgatggaaagatgaagatcaaagcgatc
ttcagttcacgtttgtcatctgagatcctctctgggaacattcaaaatctttgtctcatc
cgagttcttgattatacagtcaatgagatccctagtaaatctgagaagtttttgatcata
acaaagtgtgaggttgcttcacctgcacttgaaaaggagatcaaggaagtggtcgaacag
gaagaatcagacatgggtatgccgttgaagaagccaaagctagaaaatgaagtaaagagt
gaaaatatcaaggaagcgaaggggcttattttgaaaccaaagcaagagattgttgctaaa
tctgctgctcaaattgtacacgaacagcacggaaatatggccccggctgcacgaatggcc
atgacacggagagttcaccctcttgtttcattaaatccttaccaaggcaactggaccata
aaagtcagggttacaagcaaaggaaatatgcgtacctataggaacgcgagaggagaaggg
tgtgttttcaatgtggaattaacagatggagatggcacacaaatacaagcaacaatgttc
aatgaggctgcaaagaaattctatgataggtttgagctgggaaaggtttactacatatcg
aaagggacgctcagggttgctaacaagcagtttaagacagtgcaaaatgattatgagatg
accttgaatgaaaactctgaagtggaagaggctagcgatgaagcagcttgtattcccgaa
actaaattcaagtttgtcccaattgatcagttgggtccctatgtcaattcaaaagatctt
gttgatgttattggaattgttcaaagtgtttcaccgacaacgagtatccggaggaagagc
aacaatgagactgttccaaagcgtgatattgttgtagctgatgagacgaagaagactgtt
gtggtgtcattgtggaatgagcttgcaacaagtgtgggacaggaattgcacgatattgct
gataaatctcctgtagttgcgatcaaatcccttaaagttggagattttcaaggtatatct
ttgtccaccctgggcaagagcatagtgcaagtcaacccagttattgctgaatcagagaag
ctgagaaactggtatgattctgaaggtaaagagacttcaatggcctctgttggctctggt
ttgagcccttcgaccaagagtggggcaaggtccatgtactctgatcgagtatctctatct
catataacaagcaacccatccttgggggaggacaagcctgcatttttcagcattaaagca
tacataagcttcatcaaacctgatcagacaatgtggtatcgggcttgcaagacgtgcaat
aagaaagtgactgatgctctggggggtggatattggtgtgaaggatgccagaagaatgat
gcagagtgcagcttaaggtacattatggtggtaaaagtttctgatgggagcggtgaaggt
tgggtttctgcattcaatgaagaagctgaaaagatcattggttgctctgctgatgaactt
gacctactcaaatcacagataggagaagagaacacctaccaacaaagattgaaagaagcc
acttggaatcttcatcttttgagaatcagtgtctcccagaacgagtacaataacgagaag
aggcaaaggatgacagttagggctgttgctccagttgattttgctgctgagtccagattt
ttgcttgaagagatttcaaagatgaaaggttctcaatag
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