Populus nigra (Lombardy poplar): 133675467
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Entry
133675467 CDS
T10372
Name
(RefSeq) chaperonin 60 subunit alpha 2, chloroplastic-like isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
pnz Populus nigra (Lombardy poplar)
Pathway
pnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
133675467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pnz03019
]
133675467
03110 Chaperones and folding catalysts [BR:
pnz03110
]
133675467
03029 Mitochondrial biogenesis [BR:
pnz03029
]
133675467
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pnz04147
]
133675467
Enzymes [BR:
pnz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
133675467
Messenger RNA biogenesis [BR:
pnz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
133675467
Chaperones and folding catalysts [BR:
pnz03110
]
Heat shock proteins
HSP60 / Chaperonin
133675467
Mitochondrial biogenesis [BR:
pnz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
133675467
Exosome [BR:
pnz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
133675467
Exosomal proteins of other body fluids (saliva and urine)
133675467
Exosomal proteins of breast cancer cells
133675467
Exosomal proteins of colorectal cancer cells
133675467
Exosomal proteins of bladder cancer cells
133675467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
133675467
NCBI-ProteinID:
XP_061952836
LinkDB
All DBs
Position
16:12994151..12998688
Genome browser
AA seq
585 aa
AA seq
DB search
MSFSFSISEPLAFPQQPLFSSLRGNKRASGIWRNHQVVNKLVVRAGPKKISFGKDCREAL
QAGIDKLADAVSLTLGPKGRNVVLSDSKTLKVVNDGVTIARAIELPDSMENIGAILIQEV
ASKMNDMAGDGTTTAIILAREMIKTGMLAVSFGANPVFVKKGMDMAVKELVKVLKKNSFS
VKGKDDIKAVASISAGNDEFVGNLIAETIEKIGSDGVISLESSSTSDTYVIIEEGMKFDK
GYMSPQFITNQEKSLVEFDKAKVLVTDQKIANVQEIVPVLEKTTQLSVPLLIIAEDISKL
VLETLVVNKMKGLLNVAVVKCPGFGDRKKALLQDIALMTGADFLSGDFGLTLGSVTSDQL
GIARKVTITSNSTTIVADSATKAEIQARILQIKKDLAETDNAALSRKLSERIAKLSGGVA
VIKVGAHTETELEDRKLRIEDAKNATFAAMDEGIVPGGGATYVHLSEQISSIKNSMKDEN
EKIGADIVGKALLAPAKTIATNAGVDGAVVVENIRSCDWRTGYNAMTGRYEDLLNAGVVD
PCRVSRCALQSAVSIAGIVLTTQAVLVEKIKKPKPAVPYVPGITP
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgtccttctccttctctatctccgaacctcttgccttccctcaacaacccctattctct
agtcttcgtgggaacaaaagggcaagtgggatatggagaaaccatcaagtagtgaataaa
ttagtggtaagagcaggtccaaagaagatatcttttggtaaagattgtagagaagccttg
caggcaggaattgataagcttgctgatgctgtttctctcactttaggacctaaagggcgt
aatgttgttctttcggattcaaagacgctaaaagtagtaaatgatggtgttacaatagct
cgtgctatagagcttccggattcaatggagaatattggagcaattttaatccaagaggtt
gctagtaaaatgaatgatatggctggagatggcactactactgctattattttggctcgt
gaaatgatcaaaacagggatgttggcagtcagttttggggctaaccctgtttttgtaaag
aaaggaatggatatggctgtcaaagagttggtcaaagtgttgaagaagaatagtttttca
gtaaaagggaaggatgatataaaagcggtcgcttcaatttctgctggaaatgatgaattt
gttgggaacctaattgctgaaactatagagaagattggctctgatggagtaatctctctt
gaatcatcttcaacctctgatacatatgtgataatagaagaaggaatgaagtttgacaag
ggttatatgtcaccccaattcatcacaaaccaggaaaaatctttggtggagtttgacaag
gccaaagtccttgtaacggatcagaagattgcaaatgtccaagaaatagttcctgtgttg
gagaagactacccagctcagtgtcccattgttaatcattgctgaggatatctcaaagctg
gttttagaaacactagtggtgaacaaaatgaaaggtttgctcaatgttgctgttgtcaaa
tgccctggatttggagatcgaaagaaagcattgttgcaagacattgctcttatgacaggt
gctgattttctctctggtgattttgggctgacacttggaagtgtaacctcggatcaactt
ggcattgcacgaaaagttaccataacaagtaattcaacaaccatagttgctgactcagct
accaaagctgaaattcaggcaagaattcttcagataaaaaaggacctcgctgaaacagat
aatgctgccctttcaagaaagctctcagagagaattgctaaattatctggtggtgtggct
gtaatcaaggtaggagcacacacggagacagaacttgaagataggaaactcagaattgaa
gatgcaaagaatgctacatttgctgccatggatgaagggatagtacctggtggtggtgca
acatatgtacatctctcggagcagatctcctcaataaaaaattccatgaaagatgaaaat
gagaagattggtgctgatattgttggaaaggcacttcttgcacctgcaaaaacaattgca
actaatgcaggggttgatggagcagttgtggtggagaatattcgatcttgtgactggaga
actggttacaatgcaatgactggtagatatgaagatcttctcaatgcaggggtggtagat
ccttgtagggtttctagatgtgcacttcaaagtgctgtctcaattgctgggatagttcta
acaactcaagctgtgctggttgaaaaaataaagaagcccaagcccgctgtcccttatgtt
cctggaattacaccttga
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