Populus nigra (Lombardy poplar): 133675470
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Entry
133675470 CDS
T10372
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
pnz Populus nigra (Lombardy poplar)
Brite
KEGG Orthology (KO) [BR:
pnz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pnz03021
]
133675470
Transcription machinery [BR:
pnz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
133675470
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
DTHCT
DUF6526
Motif
Other DBs
NCBI-GeneID:
133675470
NCBI-ProteinID:
XP_061952843
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Position
16:complement(1549120..1552953)
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AA seq
512 aa
AA seq
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MGIVSVSSSASWTPLGFGTKFSTCRSTAKRPLIVAFKADKSNKTALVAPHEQIPLPMETT
KEKKRHGKSKKSSNRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGV
IRRCRQRKRKTSESEKEDDDRTSKIIVKNQAKKAKRLSLQKRIALRIKSDEKLVTSVGKR
KGRKNENEKIDELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQVKE
HLQENSGREPTEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQDYA
NGPRYQDLCQAGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFARVSFGLE
SIRSEIQKAKLELWFQLLRKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEE
LISGVADVNGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGEIAGNL
NISREMVRKHEAKALMKLKHPTRVDYLCRYVI
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgggaattgtaagtgtttcgagctcagcttcttggacaccactaggattcggcacgaaa
ttttcaacttgtagatctacggcaaagaggccattgattgtggcatttaaagcagacaaa
tccaacaaaacagctttggttgcaccccacgagcaaatcccattgcccatggaaacaacg
aaggagaagaagagacatggtaaaagcaaaaaatcttctaatcgattaaaagctgtccgt
actgaagtttctccgtgcaccttgggagtggattacaatgaagctgctgcgaaacttgaa
aacatatacaagcttagccctggaactgacacttctgatgtggaagatgtaaatggtgtg
attaggagatgtaggcaacggaaaaggaagactagtgaaagtgaaaaggaagatgacgat
agaactagcaaaataatcgtaaagaaccaggcaaagaaggctaaacgattgagtcttcag
aaaagaattgcactgaggatcaagagtgatgaaaaattggtgacttcagttgggaagaga
aaaggtcgaaagaatgaaaatgaaaagattgatgaacttgtgagggagtattcttcttca
actgatttggccagcttggactggaaaaaaatgaagatccccccagtccttacttcagca
gagcatgcctggttatttaagttgatgcagcctatgaaagcatcccttcaagtgaaagag
catttgcaagaaaattcggggagagaaccaaccgagggtgaattagctgaggcaacagat
atggatgtgctccaagtgagaaaacaaatagaggttggtcgagctgcaaggaacaaactt
attaagcacaatctccggcttgtattgtttgtgatcaacaaatattttcaagactatgca
aatgggccaagatatcaagatctttgtcaggcaggagtgaagggacttatgacagcaatt
gatcgcttcgaacccaaaaggagattccggctctccacttatgggctgttttggattaga
catgccatcataaggtccatgacactctcaagctttgcacgtgtttcgttcggcctggaa
tcgataagatcagaaatccagaaagcaaaacttgaattgtggtttcaactgctaaggaaa
ccaacgggggaagagattattgaaaaagtagggatctccatcgagaggtaccatgaagtg
atgagggcctcaaaacctgttttgtctctccattcgagacacaaaacaacgcaagaagag
ttgattagtggagttgctgatgtcaatggaggtgatgaccggaggcaatcagctcttctc
aggcttgctcttgatgatgtgctagattcattaaaaccaaaggagagcctggtggtccgt
cagagattcggactggatggtaaaggggatagaacattaggagagattgctgggaactta
aatatctcaagagaaatggtccggaagcacgaagctaaagcgctcatgaagctcaagcat
ccaacgagagtggattatctttgccgctatgttatctga
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